Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1282 ATGGCTCTGACCTttaccctctctctctctctcgtcgTCGTTTCGTTAGGGCATAAAACCCCTTTTCGGATCGGTGGAGCAAAGCCTCGCCGGCGAGATTCCCGAGGCTGTTCAATCGGCGATCGAGCACCGGCGAAAGAGACGAAGATGAAGATTTTCGTGAAGACTCTCAAGGGAACGCACTTCGAAATTGAAGTGAACCCCTCGGACACGCTTTCTGAagtgaagaaaaatatagaaactgTTCATGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTAAAGGATGGTACTACTTTGGAGGAAAATAAAGTAGCTGAAAAtagttttattgtaattatgcTATCAAAgACTAAGAGCTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCCAAGACAAGTGCAGCTCCTACTTCAACCTCTGTGTCTGCTGCACCTCAAGCTCCTGCTTCAACTGGAGCGACGCCTACACCTGTTACTGCCCCAGCAGCTGCTACTGCTTCTGCACCAGCTCCTGCTCCTGCTTCTGCACCAGCTCCTACTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTGCCAGGGTCTGATATATATGGGCAGGCAGCATCCAATCTTGTTGCTGGAAGCAACTTGGAGGAAACAATTCAGCAAATCCTTGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTGTTCGTGCTCTTCGTGCCGCTTATAACAACCCCGAGAGAGCTGTTGAATATTTGTATTCCGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGTGCCTGTGAGTGCTCAACCTGCAAATCCTCCAGCAGCTGCTCCACAGGCAGCACAACCAGCATCTGTTCCTTCTAGTGGACCTAATGCTAATCCTTTAGACCTCTTTCCCCAGGGCCTTCCTAATGTTGGTTCTGGTGCTGCTGGCGCTGGCTCTTTAGACTTTCTGCGCAACAGTCAACAGTTCCAAGCCTTACGTGCTATGGTGCAAGCTAATCCACAAATATTGCagCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCAAGAGCATCAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGaaatatactGGGACAGCTGGCTGATGCCATGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAACGTCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTTGTAACAAAAATGAGGAACTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGACGAATAA 1383 0.4657 MALTFTLSLSLVVVSLGHKTPFRIGGAKPRRRDSRGCSIGDRAPAKETKMKIFVKTLKGTHFEIEVNPSDTLSEVKKNIETVHGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKTKSSSGEGSTTSTAPSAKTSAAPTSTSVSAAPQAPASTGATPTPVTAPAAATASAPAPAPASAPAPTPAPAPAPAPAPISSGSAVPGSDIYGQAASNLVAGSNLEETIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTRVPVSAQPANPPAAAPQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLADAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1282 460 PRINTS DNA repair protein Rad23 signature 442 457 IPR004806 GO:0006289
Ssu2g1282 460 PRINTS DNA repair protein Rad23 signature 410 426 IPR004806 GO:0006289
Ssu2g1282 460 PRINTS DNA repair protein Rad23 signature 361 383 IPR004806 GO:0006289
Ssu2g1282 460 PRINTS DNA repair protein Rad23 signature 427 441 IPR004806 GO:0006289
Ssu2g1282 460 MobiDBLite consensus disorder prediction 126 207 - -
Ssu2g1282 460 MobiDBLite consensus disorder prediction 126 173 - -
Ssu2g1282 460 MobiDBLite consensus disorder prediction 283 315 - -
Ssu2g1282 460 CDD Ubl_Rad23 50 123 - -
Ssu2g1282 460 SUPERFAMILY Ubiquitin-like 50 128 IPR029071 -
Ssu2g1282 460 SUPERFAMILY UBA-like 397 459 IPR009060 GO:0005515
Ssu2g1282 460 SMART CBM 333 376 IPR006636 -
Ssu2g1282 460 SUPERFAMILY XPC-binding domain 332 397 IPR036353 GO:0003684|GO:0006289|GO:0043161
Ssu2g1282 460 Pfam UBA/TS-N domain 229 267 IPR015940 -
Ssu2g1282 460 Pfam UBA/TS-N domain 416 451 IPR015940 -
Ssu2g1282 460 Gene3D - 326 391 IPR036353 GO:0003684|GO:0006289|GO:0043161
Ssu2g1282 460 ProSiteProfiles Ubiquitin domain profile. 50 128 IPR000626 GO:0005515
Ssu2g1282 460 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 413 454 IPR015940 -
Ssu2g1282 460 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 50 459 - -
Ssu2g1282 460 CDD UBA1_Rad23_plant 223 272 - -
Ssu2g1282 460 PANTHER UV EXCISION REPAIR PROTEIN RAD23 50 459 - -
Ssu2g1282 460 Pfam Ubiquitin family 52 125 IPR000626 GO:0005515
Ssu2g1282 460 MobiDBLite consensus disorder prediction 184 204 - -
Ssu2g1282 460 Gene3D - 408 455 - -
Ssu2g1282 460 SMART uba_6 229 269 IPR015940 -
Ssu2g1282 460 SMART uba_6 416 453 IPR015940 -
Ssu2g1282 460 TIGRFAM rad23: UV excision repair protein Rad23 50 459 IPR004806 GO:0006289
Ssu2g1282 460 Gene3D - 43 126 - -
Ssu2g1282 460 Pfam XPC-binding domain 335 390 IPR015360 GO:0003684|GO:0006289|GO:0043161
Ssu2g1282 460 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 227 270 IPR015940 -
Ssu2g1282 460 SUPERFAMILY UBA-like 226 280 IPR009060 GO:0005515
Ssu2g1282 460 SMART ubq_7 50 124 IPR000626 GO:0005515
Ssu2g1282 460 Gene3D - 222 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1282 Ssu-Chr2 55326572 55344850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1282 50 123 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.892 1.67e-09 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1282 2 55326572 55344850 Ssu2g1282 2 55326572 55344850 ECH