Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1269 ATGCCTGAGTTTTGTGTGATAGGGGGTACTGGGTTCATCGCATCTTACCTGGTGAAGGCCTTACTAGAAAAGGGTCACACAGTGAGGGCCACCGTGAGAAACCCAGgtGATGTGGAGAAGGTTGGTTTTCTCACTGAACTAAGGGGAGCCAAAGAGCGACTGAAGATTTTGAAAGCAGATCTATTGGTAGAAGGAAGCTTTGACGAGGCAGTAACAGGTGTTGATGGTGTCTTTCATATGGCGTCCCCTGTTCTTATTCCATATGATGAGAATGTTCAGGCGAATTTGATTGACCCTTGTATAAAAGGAACCTTGAATGTGCTTAACTCCTGTGTAAAAGCAAATGTCAAACGTCTTGTGCTCACCTCTTCTTGCTCTTCCATAAGATACCGTGATGATGTGCAACAAGTGTGTCCTCTTAATGAATCTCATTGGACTGATCTAGAGTACTGCAAACGCTATAACCTGTGGTATGCATATGCAAAGACAGTAGCGGAGAGAGATGCATGGAGGATTGCAAAGGAATGTGGAATGGATCTAGTGGTGGTTAACCCCTCTTTCGTTGTTGGTCCCCTACTTGCACCACAGCCAACTAGCACACTACTTTTGATACTAAGCATTGTCAAAGGCATGAAAGGAGAATATCCAAACACAATAGTGGGGTTTGTACACATAAACGATGTGGTAGCTGCTCATTTGTTGGCTATGGAGGATCCCAAGGCATCTGGCAGGCTTATTTGTTCAAGCACAGTAGCTCACTGGTCACAAATCATTGAAATGCTTCGTGCCAAATATCCTTCCTATCCATACGAAAACAAGTGTGGCTGCCAGGAAGGAGATAATAACCCACACAACATGGATACCACTAAAATTAGGCAATTAGGGTTTCCGCCATTCAAAACCCTTGAACACATGTTTGACGATTGCATCAAAAGCTTTCAAGAGAAGGGTTTACTATGa 960 0.4375 MPEFCVIGGTGFIASYLVKALLEKGHTVRATVRNPGDVEKVGFLTELRGAKERLKILKADLLVEGSFDEAVTGVDGVFHMASPVLIPYDENVQANLIDPCIKGTLNVLNSCVKANVKRLVLTSSCSSIRYRDDVQQVCPLNESHWTDLEYCKRYNLWYAYAKTVAERDAWRIAKECGMDLVVVNPSFVVGPLLAPQPTSTLLLILSIVKGMKGEYPNTIVGFVHINDVVAAHLLAMEDPKASGRLICSSTVAHWSQIIEMLRAKYPSYPYENKCGCQEGDNNPHNMDTTKIRQLGFPPFKTLEHMFDDCIKSFQEKGLL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1269 319 Pfam NAD dependent epimerase/dehydratase family 5 241 IPR001509 -
Ssu2g1269 319 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 1 318 - -
Ssu2g1269 319 PANTHER TETRAKETIDE ALPHA-PYRONE REDUCTASE 2 1 318 - -
Ssu2g1269 319 CDD FR_SDR_e 5 296 - -
Ssu2g1269 319 Gene3D - 3 319 - -
Ssu2g1269 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 314 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1269 Ssu-Chr2 54940268 54944354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1269 5 318 Miscellaneous Gene Families AT5G19440 43.438 1.76e-84 256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1269 2 54940268 54944354 Ssu2g1269 2 54940268 54944354 ECH