Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1245 ATGAACCCAAAATCACTCACAGATCTCCtccccctcctcctcctcctcctctctctcttacCCACTATCACTTTCTCTTTGGACCCAAAGTTTGAAGCCTGCGAGCCCAAGACATGTGGGAACAGCCAAAACATAAGCTACCCGTTCTACATCCAAGGGACACAACAACCCTTTTGCGGGCAGCCAGGTTTCGAGCTAAGGTGTGACAACAGCAACATCGGTTTCCCAATTCTCAGTCTCTATCTCATCAACACCCAATACACAGTCCAGAAGATTTTCTACAACAACCACACCCTCCGACTGTCCAACCCCGCGTTTTCGCTGCGGAACAATTCTTCTTCCTGCATCGCTCCCGTTCAGAACCTCGTGGTCAGCAGGTACAGGTACCGGCTCCCTCCGAACCAGAGGCATGTGTTTGTGTTCTACGGATGCGACTTAGCGGCGCTCCCCGAAGAGGCGAGAGTGGGGAGGGTCGGGTGCGACGAGGAAAACGAAACGGCGTCGGTTGTGGGGCTGTATCGGGAGGATCGGAATTTGCGGTTGGCGTGGGAGAAATGCAAGGATGGTGCGGTGAATGCGACGGTGGAAGATGCGAACGGAGGGGTTCTGGAAGCGCTGAGGAGAGGGTTTTTGCTGACGTGGAGTGCGACTAACTGCACGGAATGTGAGGACAGCGGAGGAAGGTGCGGGTTCGACACAGACCCTAGTACCTACGCTTTCAGGTGTCTCTGTCCTGATAGACCTCATGTTGTGAAGTGTAGTGATACAGGGGCAAATGGGTTGAGTAAGCCAGGAAAAATAGGCGTAGGTTTAAGTGCTGGACTCCTATGCATCTTCATGATTGGGTTGCTCCTATATTGCAAAAGAAAACACAGTTCCTCAAGTGGTCTACTCCAAACAAGAAGTACTTATTCTAGTCCCTCTCTGAATCCAGATGTCATAAATAGCAGTGTGTACTATGGAGTTCTCCTCTTCTCCTACAAGGAGCTTGAAGAAGCAACAAACCGTTTTGATCTTAATAAACAAATTGGAGATGGAGGCTTTGGGACTGTCTACTATGGTAAGCACTCAAgcagttaa 1080 0.4833 MNPKSLTDLLPLLLLLLSLLPTITFSLDPKFEACEPKTCGNSQNISYPFYIQGTQQPFCGQPGFELRCDNSNIGFPILSLYLINTQYTVQKIFYNNHTLRLSNPAFSLRNNSSSCIAPVQNLVVSRYRYRLPPNQRHVFVFYGCDLAALPEEARVGRVGCDEENETASVVGLYREDRNLRLAWEKCKDGAVNATVEDANGGVLEALRRGFLLTWSATNCTECEDSGGRCGFDTDPSTYAFRCLCPDRPHVVKCSDTGANGLSKPGKIGVGLSAGLLCIFMIGLLLYCKRKHSSSSGLLQTRSTYSSPSLNPDVINSSVYYGVLLFSYKELEEATNRFDLNKQIGDGGFGTVYYGKHSSS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1245 359 Pfam Wall-associated receptor kinase C-terminal 194 246 IPR032872 -
Ssu2g1245 359 Pfam Wall-associated receptor kinase galacturonan-binding 34 102 IPR025287 GO:0030247
Ssu2g1245 359 PANTHER WALL-ASSOCIATED RECEPTOR KINASE GALACTURONAN-BINDING PROTEIN 11 256 - -
Ssu2g1245 359 PANTHER OS01G0690200 PROTEIN 11 256 - -
Ssu2g1245 359 SUPERFAMILY Protein kinase-like (PK-like) 303 357 IPR011009 -
Ssu2g1245 359 Gene3D Phosphorylase Kinase; domain 1 322 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1245 Ssu-Chr2 54205543 54212902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1245 13 354 Receptor kinase-like Gene Family AT5G38260 26.536 2.39e-19 87.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1245 2 54205543 54212902 Ssu2g1245 2 54205543 54212902 ECH