Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1223 ATGGACGACAGTCTTCTGGGTCTTCTCAAACTTCGAATTAAAAGAGGTATTAATCTTGCAATTCGCGATGCTCGTGCCAGCGACCCTTATGTTGTCGTCAACATTGGCGATCAGAAGTTGAAGACTAGTGTTGTAAAAAACAACTGCAATCCTGAGTGGAATGAAGAATTGACCCTTTCTATAAAGGACGTTAAAACCCCAATCCATCTGACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGACGCAGATATAGACTTAAAGCcctatgttcagtgtatgcagATGGGGTTGAACCAGCTCCCAAATGGTTGTTCAGTCAAGAGGGTTCAACCAGATAGAACTAATTGCCTTGCTGATGAGAGCAGCTGCATTTGGCACaatggaaaaattattcaaGAAATGATTTTGAGATTGAGAAATGTTGAGCGTGGGGAGGTAGTGGTGGAAATTGAGTGGGTTGATATTCCTGGTTGCAAGGGCTTATCACAGGTAGAACTTTAA 516 0.3973 MDDSLLGLLKLRIKRGINLAIRDARASDPYVVVNIGDQKLKTSVVKNNCNPEWNEELTLSIKDVKTPIHLTVYDKDTFSVDDKMGDADIDLKPYVQCMQMGLNQLPNGCSVKRVQPDRTNCLADESSCIWHNGKIIQEMILRLRNVERGEVVVEIEWVDIPGCKGLSQVEL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1223 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 164 IPR044562 -
Ssu2g1223 171 SMART C2_3c 8 103 IPR000008 -
Ssu2g1223 171 CDD C2_ArfGAP 6 149 - -
Ssu2g1223 171 Pfam C2 domain 8 93 IPR000008 -
Ssu2g1223 171 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Ssu2g1223 171 Gene3D C2 domain 4 164 IPR035892 -
Ssu2g1223 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 4 164 - -
Ssu2g1223 171 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 143 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1223 Ssu-Chr2 53667141 53671453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1223 39 168 C2H2 Transcription Factor Family AT1G70790 66.667 4.68e-62 187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1223 2 53667141 53671453 Ssu2g1223 2 53667141 53671453 ECH
Ssu2g1223 2 53667141 53671453 Ssu5g3501 5 85905698 85906610 ECH