Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1189 ATgttcctttcctttctctcttctctttcatcCTTCGGCCAAATCATGTTGGCCTCGACACTCCTAACGCCTTCGAAGCTCAACCCTTCGCATTTCGTCTCTCTCACCATCTTCGCAGAAACTCACCCGAGAAACAGAGTCGCAGTCTTTTCCAAATCGAACTCCAAACTCGCTTTCGTTGCTAGGGCTAGTAGTAACGGCCGTGACAGCGCCGTTGACGCTACCTCTCCCCCTGGCATTGATGCAGTAACTAGTACATCTTCTGACCTGGGCGATGGTTATGTGGCCTTGTTTGTTCGTATGTTAGGCCTAGATCGTGATCCTCTGGATAGAGAACAAGCTATAATGGCTCTCTGGAAATATTCGCTTGGTGGAAAGAAGTGTATAGACACTATAATGCAGTTTCCTGGTTGTATTAATCTCGTTGTGAACCTCCTCAGATCAGAGTCTAGTTCAGCTTGTGAGGCAGCTGCGGGCCTTCTGCGATCACTATCTTCAGTCAATCTGTATAGAAATTCTGTAGCTGATAGTGGAGCAATAGAAGAGATAAACAGATTGCTGAGGCAGTCTTCCTTGGCTCCTGAGGTAAAGGAGCAGAGTTTGAGTACACTGTGGAATTTATCTGTTGATGAGAAGCTGtgcattaaaatttcaaagaccGATATTCTGCCGTTAGCTATTAAGTACCTTGACGATGAGGATATAAAAGTGAAGGAGGCTGCGGGAGGCATTTTGGCAAATTTAGCATTGAGCCGTGTTAACCACAACATCATGGTTGAAGCAGGTGTTATACCAAAATTGGCAAAGTTCTTAACGTCTAATTTGGAAGGATCTAAAGTTATTAGGAAGGAAGCAAGGAATGCATTGCTGGAATTTTTTAAGGACAAGTATTATAGAATTCTTGTTATTGAGGAAGGTCTGGTCCCTGTGCCATTAATTGGTGCTGCAGCCTTTAAGTCATTCACCCCAGGCCTACATTTGTGGCCCACATTACCTGATGGTACAGAAATTGAAAGGACTTCTAGACAGCCATCCAGATATGGTGCTTCGGAATTACTTCTTGGATTAAATATTGATGACAAGAATGCTAAGTTAGAGGAAGCAAAAGTCAATGCAATTGTTGGACGAACACAACAGCAATTCCTTGCTCGTGTTGGGGCTttagaaatggaagaaaagacTATACCTCATTCTGAATGCTCAAATGATCAGAGGTTTACACTTTTACCTTGGATGGATGGTGTTGCTCGTTTAGTACTGATACTAGAACTGGAACATAAGTCTGCGATAATAAAGGCTGCAGAGTCAATTGCTACTGCATGTATCAATGAACACATGCGTATTGCATTCAGGGAGGCTGGAGCAATTAAGCATTTAGTAAGGCTTTTGAATTGTGATGATAATGCAGTCCAGTTGGCGGCAACACAAGCTTTGGAAAGGCTGTCTGTTAGCAATATTGTTTGCCGGGTAATTGAAGCCGAGGGGGTTTTAGGTCCTTTAGTTAGTATTTTGAAATGCTCAGAGATGGCTGGAACTATTGTCGAAAAgTCCTTGAACATACTTGCTCGGATATTAGACCCCAGTAAAGAGATGCAATTGAAGTTTTATGATGGACCAGTTGATGGATCTGAAAAGGCATTTGGTGGAGCAAAAAGTGATGGTGTTTCAACCGGGTTTAGTAGCACTGAACAAGCCGTATCAAAAACATACACAAGGAATGATGTACTGGATTCTGTTTTCATTGCACACCTTGTTGAGATTCTGAAGTCCTCTCCTCCCAGTTTACAAGAAAAAGCTGCATCTGTGCTTGAGTTTGTGGCATTGACTGACCCAACTCTAGCCCCAATTATATCTTTGGATATTGAATCTAGTCTCAATTCTGCTTTTCagcaaaaaattttgaaaatttcagCGGACATGGAATCTGACATAGAAGATCAGTTTTCTGAAGCATATgcaattgaatttgaagaagCTGGTCTTGCAATATCTGCAGCATCCCGGTTATTGACAAGACTACTCGATAGTGAGCGGTTCCGCCACAAAATAAATTCCACCCATTTCATTGATTTGCTTCGTGGAATCCTGAGGTCCAACATTCCACTCCACAGCAAAGATTGGGTAGCTGCTTGCCTAGTTAAACTGAGTTCTCTCTCTGGCACCATCACGAGTCTCTATCCAATCAATATGGAAGTTACACTCTACGAGACAATCCCAAGACTTCTAGAACAGATCAAAACTTCATTCTCCCCAGAAGCACAGGAAACTGCTGTTGTAGAACTTAATAGAATAATATCTGAAGGAGTGGTAGATTCCACAGAAGCTATTATTTCTGATGGGGCAGTATATTCATTGGTGAAGCTGATTGAAGAAGGTAGTGATACGGCTGTAGAAGCAAGCTTGGCAATACTGTATAATCTGAGTATGGACAGTGAGAACCATTCAGCACTCGTGGCTGCTGGAGCAGTGCAGGTCTTAAAAAGAATTGTTCTATCAAACAGACCACACTGGGAACGGGCACTTCTTTTACTTAGGATTTTGCAACCGTGA 2550 0.4098 MFLSFLSSLSSFGQIMLASTLLTPSKLNPSHFVSLTIFAETHPRNRVAVFSKSNSKLAFVARASSNGRDSAVDATSPPGIDAVTSTSSDLGDGYVALFVRMLGLDRDPLDREQAIMALWKYSLGGKKCIDTIMQFPGCINLVVNLLRSESSSACEAAAGLLRSLSSVNLYRNSVADSGAIEEINRLLRQSSLAPEVKEQSLSTLWNLSVDEKLCIKISKTDILPLAIKYLDDEDIKVKEAAGGILANLALSRVNHNIMVEAGVIPKLAKFLTSNLEGSKVIRKEARNALLEFFKDKYYRILVIEEGLVPVPLIGAAAFKSFTPGLHLWPTLPDGTEIERTSRQPSRYGASELLLGLNIDDKNAKLEEAKVNAIVGRTQQQFLARVGALEMEEKTIPHSECSNDQRFTLLPWMDGVARLVLILELEHKSAIIKAAESIATACINEHMRIAFREAGAIKHLVRLLNCDDNAVQLAATQALERLSVSNIVCRVIEAEGVLGPLVSILKCSEMAGTIVEKSLNILARILDPSKEMQLKFYDGPVDGSEKAFGGAKSDGVSTGFSSTEQAVSKTYTRNDVLDSVFIAHLVEILKSSPPSLQEKAASVLEFVALTDPTLAPIISLDIESSLNSAFQQKILKISADMESDIEDQFSEAYAIEFEEAGLAISAASRLLTRLLDSERFRHKINSTHFIDLLRGILRSNIPLHSKDWVAACLVKLSSLSGTITSLYPINMEVTLYETIPRLLEQIKTSFSPEAQETAVVELNRIISEGVVDSTEAIISDGAVYSLVKLIEEGSDTAVEASLAILYNLSMDSENHSALVAAGAVQVLKRIVLSNRPHWERALLLLRILQP 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1189 849 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 178 211 IPR000225 GO:0005515
Ssu2g1189 849 SUPERFAMILY ARM repeat 92 829 IPR016024 -
Ssu2g1189 849 SMART arm_5 568 608 IPR000225 GO:0005515
Ssu2g1189 849 SMART arm_5 125 166 IPR000225 GO:0005515
Ssu2g1189 849 SMART arm_5 167 209 IPR000225 GO:0005515
Ssu2g1189 849 SMART arm_5 443 483 IPR000225 GO:0005515
Ssu2g1189 849 SMART arm_5 769 809 IPR000225 GO:0005515
Ssu2g1189 849 SMART arm_5 210 250 IPR000225 GO:0005515
Ssu2g1189 849 SMART arm_5 251 294 IPR000225 GO:0005515
Ssu2g1189 849 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 22 848 - -
Ssu2g1189 849 Gene3D - 400 620 IPR011989 -
Ssu2g1189 849 Pfam Armadillo/beta-catenin-like repeat 443 482 IPR000225 GO:0005515
Ssu2g1189 849 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 137 179 IPR000225 GO:0005515
Ssu2g1189 849 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 454 485 IPR000225 GO:0005515
Ssu2g1189 849 SUPERFAMILY ARM repeat 412 718 IPR016024 -
Ssu2g1189 849 Gene3D - 657 847 IPR011989 -
Ssu2g1189 849 Gene3D - 89 318 IPR011989 -
Ssu2g1189 849 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 780 822 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1189 93 323 U-box Gene Family AT2G23140 29.487 3.22e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1189 2 52797548 52809250 Ssu2g1189 2 52797548 52809250 ECH