Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1187 ATGGGCACCCTTCAGACTTGGAGAAAAGCCTACGGCGCCCTCAAAGACACCACTAAAGTCAGTCTCGCCCATGTCAACAGCGATTATGCGGACTTGGACGTTGCCGTAGTCAAAGCCACCAACCACGTCGAGTGTCCTCCCAAAGAGAGACACCTTAGAAAAATCTTGTTCGCGACTTCTGCTGTGCGGCCCAGAGCTGATGTCGCTTACTGCATTCATGCGCTTGCGCGTCGATTGGCCAAGACGCGAAACTGGACGGTGGCATTGAAAACATTGATAGTCATTCATAGGTTATTGAGGGAGGGTGATCCTACTCTTAGAGAAGAATTTGTTAATTTCTCACAGAGGGGGCGCATACTCCAACTTTCTAATTTCAAAGATGATTCTAGCCCAATTGCTTGGGATTGTTCTGCCTGGGTACGTACTTATGCATTATATTTGGAAGAAAGACTTGAATGTTTCCAGATTCTGAAGTATGATATTGAAGCTGAGCGTCTACCTAAGCCTGTTGCTGGGCAGGAGAAGGGGTACAGCAGGACCAGGGATTTGAATAGTGAGGAGCTATTGGAGCAATTGCCTGCTTTGCAGCAGCTGCTCTATCGTCTTGTTGGTTGTCGTCCAGAAGGAGTAGCTGTTAGCAACTATGTGATACAATATGCCCTGGCTCTGGTTCTAAAAGagagctttaaaatttattgtgctATTAATGACGGCATTATCAATCTTGTTGATAAGTTTTTTGAGATGCCCAGACATGAAGCTATCAAAGCCCTTGATGTCTATAAACGTGCGGGTCAGCAGGCTGCAAGTCTCTCTGATTTCTATGAAATATGCAAAGGATTGGAACTTGCTAGGAATTTTCAGTTTCCTGttttaagagagCCTCCACAATCATTTCTTGTAACCATGGAAGACTACATAAAGGAGGCACCGCGAGTGGTTACAGTTCCAATTGAGCCACTGTTGCAGTTGACTTACAGACCAGAAGAAGATGCTCCCACAATTGAAGACGTCAAATTATCTGAAGAACAGGAGCCATCAGTGCCTGTTGATGATGTTGTCTCAAATTCCGAGCCTGCTCCTCCTCCTCTACCATCTCACAACAATTTTGAAACTGGAGACTTACTGGGGTTGAATGACGGTACACCTGATGTATCCTTGATAGAAGAAAGAAACGCTCTTGCCCTAGCTATAGTTCCCACCGAAACTGATTCAAGTGCTGCTCAGGCCAGAGATTTTGATCCAACTGGATGGGAGCTTGCCCTGGTCTCCACTCCAAGTACCAATATTTCTTCGGTCAATGAGAGACAATTGGCTGGTGGATTGGATTCTCTCACCCTTGACAGCTTATATGATGAAGGAGCATATAGATCTGCACAGCAACCAGTATATGGAGTGCCAGCCCCAAATCCATTTGAAGTGCAAGATCCTTTTGCTTTATCAAGTAGCATCCCTCCCCCTACCCACCGTACAAATGGCAGCAATTGCTCGACAGCAAGATACGGGGCAGTTCCTGTGAATCCTGTTTTTCACCCACATAATAACAATCCATTTGGAAGTGCTGGCTTGATATAG 1575 0.4495 MGTLQTWRKAYGALKDTTKVSLAHVNSDYADLDVAVVKATNHVECPPKERHLRKILFATSAVRPRADVAYCIHALARRLAKTRNWTVALKTLIVIHRLLREGDPTLREEFVNFSQRGRILQLSNFKDDSSPIAWDCSAWVRTYALYLEERLECFQILKYDIEAERLPKPVAGQEKGYSRTRDLNSEELLEQLPALQQLLYRLVGCRPEGVAVSNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALDVYKRAGQQAASLSDFYEICKGLELARNFQFPVLREPPQSFLVTMEDYIKEAPRVVTVPIEPLLQLTYRPEEDAPTIEDVKLSEEQEPSVPVDDVVSNSEPAPPPLPSHNNFETGDLLGLNDGTPDVSLIEERNALALAIVPTETDSSAAQARDFDPTGWELALVSTPSTNISSVNERQLAGGLDSLTLDSLYDEGAYRSAQQPVYGVPAPNPFEVQDPFALSSSIPPPTHRTNGSNCSTARYGAVPVNPVFHPHNNNPFGSAGLI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1187 524 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Ssu2g1187 524 MobiDBLite consensus disorder prediction 339 377 - -
Ssu2g1187 524 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Ssu2g1187 524 Gene3D ANTH domain 173 325 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Ssu2g1187 524 Gene3D - 7 161 IPR008942 -
Ssu2g1187 524 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 492 IPR045192 GO:0048268|GO:0072583
Ssu2g1187 524 SUPERFAMILY GAT-like domain 178 309 - -
Ssu2g1187 524 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Ssu2g1187 524 PANTHER OS05G0549000 PROTEIN 1 492 - -
Ssu2g1187 524 CDD ANTH_N 32 154 - -
Ssu2g1187 524 SMART enth_2 30 161 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1187 Ssu-Chr2 52757660 52771294 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1187 2 52757660 52771294 Ssu2g1187 2 52757660 52771294 ECH