Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1183 ATGACCAAACCCAACACTTTTTTTCACAATCTCATCAAGCccttcaaattcagttccagtAAAGAGGGTCAGAGCGAAGACGACATACAGAACATAGCTGCACAGGAGCAGAAGATCTTCCCCTACGAAACATTGGTTGCTGCTACTAAGAATTTTGACATTCTTAAAAAGCTAGGTGAGGGAGGATTTGGACCCGTCTACAAGGGGAAATTGAATGATGGGAGAGAGATTGCGGTGAAGAAGTTATCGCATAGATCGAATCAAGGGAAGACGCAATTCGTTACCGAGGCCAAGGTGTTGTCTCGTGTGCAGCACCGTAATGTGGTGAATTTGTTCGGTTATTGTATCCATGGCTCCCAGAAGCTTCTTGTTTACGAGTATGTCCCTCGCGAGAGCCTTGACAAGCTTCTCTTCAAATCCCACAAGAGGGAACAGCTAGATTGGAAACGTAGATTTGACATAATCAATGGGGTGGCAAGAGGGTTGCTTTATCTTCACGAAGACTCTCACAATTGCATAATACATCGCGACATAAAGGCAAGTAACATCTTACTCGATGAAAAATGGGTGCCCAAGATTGCAGATTTTGGCCTTGCGCGTCTCTTCCCCGAAGACCAAACCCACGTCAACACACGTGTGGCTGGAACCAACGGATATTTGGCTCCGGAGTATTTGATGCATGGACATCTATCTGTGAAGGCAGACGTATTTAGCTATGGGGTTTTGATGTTGGAGTTGATCAGTGGCCAGCGAAATTCATCGTTTGATTTGGATGTGGATGCACAGAATCTCCTGGACTGGGCATACAAACTATACAAGAAAGGGAGGGCCTTAGAACTCGTGGACCCTACATTGGCCTCTTCAGTGGCAACTGAACAAGTAGAAATGTGTATTCAACTGGGTCTGCTCTGCACTCAAGGTGATCCACAACTACGCCCAACCATGGGGCGTGTGGTGGTGATGTTGTCAAGGAAACCAGGTCACATGGAAGAACCAACAAGACCAGGAATGCCCGGTTCCAGATATAGGAGAGTACCTCGCAGACCCTTTGCAATGTCTTCTACTATGGGAACTTCTGGGGCTGATGATATTGATGACTCTGATTCACGCACTTTTGATTCAAGCAATCATGGCACTAATATTACTTCTGTAACACCATCAACAAGCTCGAATACTACAGCAGAAGTAGACCGCCGAGGGAAACGACCAATGCAAGGTTAG 1221 0.4545 MTKPNTFFHNLIKPFKFSSSKEGQSEDDIQNIAAQEQKIFPYETLVAATKNFDILKKLGEGGFGPVYKGKLNDGREIAVKKLSHRSNQGKTQFVTEAKVLSRVQHRNVVNLFGYCIHGSQKLLVYEYVPRESLDKLLFKSHKREQLDWKRRFDIINGVARGLLYLHEDSHNCIIHRDIKASNILLDEKWVPKIADFGLARLFPEDQTHVNTRVAGTNGYLAPEYLMHGHLSVKADVFSYGVLMLELISGQRNSSFDLDVDAQNLLDWAYKLYKKGRALELVDPTLASSVATEQVEMCIQLGLLCTQGDPQLRPTMGRVVVMLSRKPGHMEEPTRPGMPGSRYRRVPRRPFAMSSTMGTSGADDIDDSDSRTFDSSNHGTNITSVTPSTSSNTTAEVDRRGKRPMQG 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1183 406 ProSiteProfiles Protein kinase domain profile. 52 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1183 406 MobiDBLite consensus disorder prediction 326 406 - -
Ssu2g1183 406 SMART serkin_6 52 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1183 406 Gene3D Phosphorylase Kinase; domain 1 15 127 - -
Ssu2g1183 406 MobiDBLite consensus disorder prediction 373 394 - -
Ssu2g1183 406 Pfam Protein kinase domain 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1183 406 Gene3D Transferase(Phosphotransferase) domain 1 128 332 - -
Ssu2g1183 406 PANTHER RECEPTOR-LIKE KINASE 3 359 - -
Ssu2g1183 406 CDD STKc_IRAK 58 324 - -
Ssu2g1183 406 SUPERFAMILY Protein kinase-like (PK-like) 37 346 IPR011009 -
Ssu2g1183 406 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 359 - -
Ssu2g1183 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1183 Ssu-Chr2 52729326 52734228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1183 20 337 Receptor kinase-like Gene Family AT4G11530 49.062 4.79e-108 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu2g1183 Pkinase 2.1e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1183 2 52729326 52734228 Ssu2g1183 2 52729326 52734228 ECH