Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1181 ATGACACCCCGtttcctcctctctctcttattCTTCACATTCACATTCACATTCTCCCATCTCACCGCAACCGCAACTGCAACCGCAAACGCCACCGCCGTCGACGGCACCGGCGACACCGACTTCATCCGCGCAAGCTGCAACGCAACGCTATACCCTGACCTGTGCTTCTCCTCCCTCTCCGGCTTCGCCGGCGCGGTGCAGCGCAGCCCCGCCAGCCTCGCCCGCGTGGCCGTGGCCGTGGCACTCTCGAAGGCCCACGGCGCCGCCGCCTACCTCTCGCACCAAACCGCCGGCGACGAAGACTCCGGCGCCGGCGCCGCCCTCCGCGACTGCTTCGCGAACCTGGAGGACGCGGTGGACGAGATCCGCGGCTCGCTGAGGCAGATGCGCCGGCTCAGACCGGACGCGGACTCCGGGTCGATCCGGTTCGGGCTGAGCAACGTGCTGACGTGGATGAGCGCGGCGCTGACGGACGAGGAAACGTGCACGGACGGGTTCGAGGACGTAGCGGAGGGTCCCGTGAAGACGAACGCATGCGATCGCGTCACCAGGGTGAAGAAGTTCACTAGCAATGCTCTGGCGCTCGTGAACGGTTTCGCTAATAACTTGTAA 615 0.639 MTPRFLLSLLFFTFTFTFSHLTATATATANATAVDGTGDTDFIRASCNATLYPDLCFSSLSGFAGAVQRSPASLARVAVAVALSKAHGAAAYLSHQTAGDEDSGAGAALRDCFANLEDAVDEIRGSLRQMRRLRPDADSGSIRFGLSNVLTWMSAALTDEETCTDGFEDVAEGPVKTNACDRVTRVKKFTSNALALVNGFANNL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1181 204 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 8 203 - -
Ssu2g1181 204 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Ssu2g1181 204 PANTHER PECTINESTERASE INHIBITOR-LIKE 8 203 - -
Ssu2g1181 204 CDD PMEI-like_3 45 202 - -
Ssu2g1181 204 SMART PMEI_2 38 196 IPR006501 GO:0004857
Ssu2g1181 204 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 198 IPR006501 GO:0004857
Ssu2g1181 204 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 200 IPR035513 -
Ssu2g1181 204 Coils Coil 113 133 - -
Ssu2g1181 204 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 200 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1181 Ssu-Chr2 52692611 52693225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1181 40 204 Carbohydrate Esterase AT5G53370 28.743 2.77e-15 72.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1181 2 52692611 52693225 Ssu2g1181 2 52692611 52693225 ECH