Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1048 atggaaaaggtGGCTCCGCCTCCGATTCTGATGCACAGGAAGCGCGATCTGTCGTACGGCGTCGTTCCGAGCGCGGGCGAGAGCTGGAAGTGGGAGTGGGACAGCGTGCGGTTCGCGGGGAAACCCCCGCCCCCGTCAAACGACGACGTCGTTTTCGAGGAGGAGAGTGTGCCTCTGCAGCTGAACCTCGGGGGGAGGGCGAACAGCAAGAGGGTGCGGTCGGGGTCGCCCGGAACGGCGTCGTATCCGATGTGTCAGGTGGATAACTGCAGGGAGGATCTGTCGAAGGCGAAGGACTATCACCGGAGGCACAAAGTGTGCGAGGCTCACAGCAAAGCCTCGAAGGCGCTTCTTGGCGGCCAAATGCAAAGGTTTTGCCAGCAGTGCAGCAGGTTTCACCCGCTCTCGGAGTTCGACGAGGGGAAGCGGAGCTGCCGCCGGAGACTCGCCGGACACAACCGCCGCCGGAGGAAGACGCAGCCGGAGGATGTCACGTCCGCGACCCCCGCCCCCGCCGCGGCGAACTTGGAAATCTTCAACTTGTTGACTGCTATAGCCGGAGCTTCGCAGGGAAAATTTGAGGAAAGGTCACAAGTTCCAGATAGAGAGCAGCTTGTTCAGATTCTCAATAGGATACCTTTGCCTGCTGATCTTGCAACCAAGTTGCTGGATGCTGGTAATGTCACTGGGAAAAAAGATCTTGTGCAGTTGCAGATGCCATCTTCCTATCATCGTCATGACCAACTGAACAACACCCCGTCTGCCCCGTTAACTATGGACTTGCTTGCTGTTCTTTCCACCACTCTTTCTGGGTCTGCCCCTGATGCCAGTGCCTCACCCTCTCAAAATCGCAGCTGCAGTAGTGATGGTGGGAGTGACAAGTCTAGGAATAGCGCTGACCAGACAAGACAACAGCAGTTCTTTTCGGTTGGTGGAGAAAGGAGCAGTAGCAGTTCCCAGTCTCCAGTTGAAGATTCAGACTGCCAGGAGGATGTTCGAGTTAATTTACCACTGCAACTCTTTAGCCCCTCTCCAGAAGATGACAGCGGgccaaaattaacattttcacgAAAGTATTTCTCATCTGACAGTAGTAACCCTGCAGAAGAGGGGTCGCCATCGTCTTCTCCTCCTGTTGTGGAGATGCAGTTTGATTTGCAAGGTGGGGCTGGAGGTCTCAAGCCAGAGAGCATCTCAACTGGAAGAGGAGTTAATGCAAATAAGGAAGCTAGCCAAAGTCATAGTTGTAATATCTCTCTTGATCTCTTTAAAGGGTCAAATAACAGGGTCCAACAACCTAGTTCACTTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGTACCGGGAGAATAATGTTTAAACTATTTGACAAGCATCCCAGCCAGTTTCCAGGAACATTACGAACACAGaTTTACAATTGGCTTTCTAATAGGCCATCAGACATGGAGAGCTACATAAGGCCTGGTTGTGTGGTCCTATCAATTTATGCTTCAATGTCTTCTGCTGCCTGGGAGAAACTAGAAGAAAACTTCCTCCAACACGTTCAttctttaattcaaaattcagattCTGATTTTTGGAGAAATGGAAGGTTTCTAGCTCATTCCGGCAGTCAGTTTGCTTCACACAAAGATGGGAAGATACGCTTATGCAAATCATGGAGAACATGGAAGTCACCAGAGTTGATATCTGTGTCCCCTTTGGCAATTGTTAGTGGACAAGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAACTCCTGGCACAAAGATTCATTGTACAGGTACTGGCTCTTACACATCAGCAGAAGTCACAGGATCTGCATATCCTGGTGtaatatatgataagataaagttgGGTGGTTTTAAAGTCCAGGAGGTATCTCCTGGGGTTCTGGGTCGCTGTTTTATTGAGGTTGAAAATGGATTCAAGGGGAACAGTTTTCCAGTGATAATAGCTGATGAGACTATTTGCAAGGAATTGAGACCACTTGAGTCTGAATTTGATGAGGAGGAAAAAATATGTGATGCCATTTCAGAGGAGCATGAACGTCATTTTGGAAGGCCCAGGTCAAGGGAGGAGGCTTTGCACTTTTTGAATGAGCTTGGTTGGCTGTTCCAAAGAGAAAGGTTCTCATATGTGCATGAGGTTCCATATTATTCGCTTGACAGGTTCAAATTTGTACTCACATTTGCTGTGGAAAGAAACTGTTGCATGTTAGTCAAAACCCTTCTGGATGTGCTGGTTGATAAACACTTGCAAGGGGAATGGTTGTCAACAGGGTCAGTGGAGATGCTGAATGCAATCCAACTCTTAAATAGAGCagtgaaaagaaaatacataggCATGGTTGATTTGCTCATCCACTATTCTATACCGAGCAAAAATGGTACATCCAGGAAATATGTATTTCCACCAAATCTTGAGGGTCCTGGTGGTATTACACCCTTGCACTTGGCGGCATGCACATCAGGTTCTGAGAGTGTAGTTGACTCTCTAACAAGTGACCCACAGGAGATTGGGTTGAAGTGCTGGGAATCCCTTGTGGATGCAAACAGACAGACTCCGCATGCCTACGCCATGATGAGGAATAATGACTCTTATAATGTGCTGGTTGCCTGTAAACTTGCTGAAAGACGAAGGGGTGAAATTTCAGTAACaattgagaatgagatagaGCAATCGTCAGTGAGAGTGCAGCTTAAGCAAAAGCAAAGTAACCTAGTCAAACAAGGTCAAAGTTCTTGTGCCAAGTGTGCGATTGCAGAAATTCACTACAACAGAAGAGTTCCAGGTTCCCAGGGCTTGCTTCACCGCCCCTTTATTTATTCAATGCTAGCTGTTGCTGCtgtttgtgtatgtgtgtgtgtgttcttcCGTGGACGCCCTTTCGTAGGCTCAGTTGCTCCCTTCAGTTGGGAAAATCTGGATTATGGCACAATGTAA 3000 0.4643 MEKVAPPPILMHRKRDLSYGVVPSAGESWKWEWDSVRFAGKPPPPSNDDVVFEEESVPLQLNLGGRANSKRVRSGSPGTASYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLGGQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATPAPAAANLEIFNLLTAIAGASQGKFEERSQVPDREQLVQILNRIPLPADLATKLLDAGNVTGKKDLVQLQMPSSYHRHDQLNNTPSAPLTMDLLAVLSTTLSGSAPDASASPSQNRSCSSDGGSDKSRNSADQTRQQQFFSVGGERSSSSSQSPVEDSDCQEDVRVNLPLQLFSPSPEDDSGPKLTFSRKYFSSDSSNPAEEGSPSSSPPVVEMQFDLQGGAGGLKPESISTGRGVNANKEASQSHSCNISLDLFKGSNNRVQQPSSLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSQFPGTLRTQIYNWLSNRPSDMESYIRPGCVVLSIYASMSSAAWEKLEENFLQHVHSLIQNSDSDFWRNGRFLAHSGSQFASHKDGKIRLCKSWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYTSAEVTGSAYPGVIYDKIKLGGFKVQEVSPGVLGRCFIEVENGFKGNSFPVIIADETICKELRPLESEFDEEEKICDAISEEHERHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPYYSLDRFKFVLTFAVERNCCMLVKTLLDVLVDKHLQGEWLSTGSVEMLNAIQLLNRAVKRKYIGMVDLLIHYSIPSKNGTSRKYVFPPNLEGPGGITPLHLAACTSGSESVVDSLTSDPQEIGLKCWESLVDANRQTPHAYAMMRNNDSYNVLVACKLAERRRGEISVTIENEIEQSSVRVQLKQKQSNLVKQGQSSCAKCAIAEIHYNRRVPGSQGLLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWENLDYGTM 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1048 999 SUPERFAMILY Ankyrin repeat 746 885 IPR036770 -
Ssu2g1048 999 Gene3D - 741 933 IPR036770 -
Ssu2g1048 999 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 999 IPR044817 GO:0003677
Ssu2g1048 999 Gene3D - 75 146 IPR036893 GO:0003677|GO:0005634
Ssu2g1048 999 Pfam SBP domain 85 158 IPR004333 GO:0003677
Ssu2g1048 999 MobiDBLite consensus disorder prediction 270 411 - -
Ssu2g1048 999 MobiDBLite consensus disorder prediction 270 325 - -
Ssu2g1048 999 MobiDBLite consensus disorder prediction 355 381 - -
Ssu2g1048 999 SUPERFAMILY SBT domain 83 163 IPR036893 GO:0003677|GO:0005634
Ssu2g1048 999 MobiDBLite consensus disorder prediction 429 461 - -
Ssu2g1048 999 MobiDBLite consensus disorder prediction 149 170 - -
Ssu2g1048 999 ProSiteProfiles Zinc finger SBP-type profile. 82 159 IPR004333 GO:0003677
Ssu2g1048 999 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 30 999 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1048 Ssu-Chr2 49030158 49035057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1048 8 999 SBP-box Gene Family AT1G20980 52.457 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu2g1048 SBP 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1048 - - gmx:100812180 1739.93