Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1023 atggaCAATAGTTCAGATCCCAAAgtctatGTTGCTACTACTGCACTTCTACTTCCCCAAAACGGCACGAAGGAGGGTGGGGATGAAGATGAGAAGCAATTGAGTGCAAGAGATGAGGTTGCTGAGGAGCTTAAGAATAAGGCTGGTGCTACTGCAATGCAACCTCCCCGAAtcgGCAAGAGAGAGGGTGAGAATGAAGATGAGAAGCAAGAGAATGCAAAGAAGCAGAAGAGAGATGATGTTGCTGAGGAGCAAAAGAATAAGGAGGAAATTGTTTCAGATGATTCCTTTTCTGATTCTGAACCAGATAAGGTGGATGCTGCATCAAATGCCCAAGACTGTGacttaaaaaatgttgaaaatgattCTTTCAGTGATAGTATTGATGACGATGACGACGGTGATGACAATAGCTATGATGTTATTGTAAAGCCACATATGGTTAGAAATCCTATGAAAAGTTCAGACAATTCAGAGAACAGTGAGGAAGAAATTGAGGAAAAAGCCTCTAAAACTCCTGAAGAAAATCCTAAAATGCTAGCTACTTCGAAAGAACAAAATGCTGGATCGAAGACAATATACGCTAAAAACTTGTCGTATAGTGTGGAACGGGCTGATttGGACAATCTTTTCAAAGAGTGTGGACAAATTGTTGATATTCGTCTACACACAGATCGTGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCAAAAAAGGCTCTTGAGTTGCATAATACAGAATTGTTGAGACGTCTCATCAGAGTTGGTTTGGCTCGAGAAAAAGGTGAATATGCCTACAATAGAAGCAACTGGAGCAACTCATTACAGAAGTGTGACAATACTTCAACTGTATTTGTGAAGGGTTTTGATAGTTCCCTTGCGGAAGAAAAGaTAAAAGCTAGCCTAGAAGAGCATTTTGGTTCTTGTGGAGAGATTGTAAGGATATCAGTTCCGAAATTTCATGATTCTGGTTCTGTTAAGGGGTTTGCTCACTTGGAGTTCAAGGATGTTGACAGTATGAAGAAAGCTCTACATCTTGATCAAACTGTGCTTGGAGGTTATCACTTGTTAGTTGAAAAAGCAAAGCCTCGATGTGATAACCATGGTATAGGTGGTGGTGGTCATCAGTTGGGTGGAAGGGATGGAAGTGGCTATAGCAGCAGAGTGGATTGGGGGagaagtggtggtggtggtggtcatCAGTTTGGTGGAAGGGATGGAAGTGGCTATAGCAGCAGAGTGGATTGGGGGagaagtggtggtggtgGTGGTCATCAGTTTGGTGGAAGGGATGGAAATGGCTATAGCAGCAGAGTGGGTTGGGGGAGAAGTGATGGTGGTGGTCATCAGTTTGGTGGAAGGGATGGAAGTGACTATAGCAGCAGAGTGGGTTGGGGGAgaagtggtagtggtggtgggtGGCATTCTTCACATTTTTCTGATGAAGGTACCCGACTCTTATGCTGA 1488 0.4052 MDNSSDPKVYVATTALLLPQNGTKEGGDEDEKQLSARDEVAEELKNKAGATAMQPPRIGKREGENEDEKQENAKKQKRDDVAEEQKNKEEIVSDDSFSDSEPDKVDAASNAQDCDLKNVENDSFSDSIDDDDDGDDNSYDVIVKPHMVRNPMKSSDNSENSEEEIEEKASKTPEENPKMLATSKEQNAGSKTIYAKNLSYSVERADLDNLFKECGQIVDIRLHTDREGRFRGFGHVEFATAEAAKKALELHNTELLRRLIRVGLAREKGEYAYNRSNWSNSLQKCDNTSTVFVKGFDSSLAEEKIKASLEEHFGSCGEIVRISVPKFHDSGSVKGFAHLEFKDVDSMKKALHLDQTVLGGYHLLVEKAKPRCDNHGIGGGGHQLGGRDGSGYSSRVDWGRSGGGGGHQFGGRDGSGYSSRVDWGRSGGGGGHQFGGRDGNGYSSRVGWGRSDGGGHQFGGRDGSDYSSRVGWGRSGSGGGWHSSHFSDEGTRLLC 495
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1023 495 Coils Coil 65 85 - -
Ssu2g1023 495 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 293 425 - -
Ssu2g1023 495 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 111 285 - -
Ssu2g1023 495 MobiDBLite consensus disorder prediction 24 45 - -
Ssu2g1023 495 CDD RRM1_NUCLs 192 268 IPR034349 -
Ssu2g1023 495 SMART rrm1_1 192 263 IPR000504 GO:0003723
Ssu2g1023 495 SMART rrm1_1 290 366 IPR000504 GO:0003723
Ssu2g1023 495 MobiDBLite consensus disorder prediction 376 495 - -
Ssu2g1023 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 267 IPR000504 GO:0003723
Ssu2g1023 495 MobiDBLite consensus disorder prediction 14 187 - -
Ssu2g1023 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Ssu2g1023 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 362 IPR000504 GO:0003723
Ssu2g1023 495 SUPERFAMILY RNA-binding domain, RBD 185 278 IPR035979 GO:0003676
Ssu2g1023 495 SUPERFAMILY RNA-binding domain, RBD 286 395 IPR035979 GO:0003676
Ssu2g1023 495 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 293 425 - -
Ssu2g1023 495 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 111 285 - -
Ssu2g1023 495 Gene3D - 275 408 IPR012677 -
Ssu2g1023 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 370 IPR000504 GO:0003723
Ssu2g1023 495 MobiDBLite consensus disorder prediction 59 110 - -
Ssu2g1023 495 Gene3D - 114 274 IPR012677 -
Ssu2g1023 495 MobiDBLite consensus disorder prediction 156 174 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu2g1023 Ssu-Chr2 48247086 48270683 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1023 187 368 Eukaryotic Initiation Factors Gene Family AT3G16380 32.086 5.73e-12 65.9
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1023 2 48247086 48270683 Ssu2g1023 2 48247086 48270683 ECH