Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu2g1023 | atggaCAATAGTTCAGATCCCAAAgtctatGTTGCTACTACTGCACTTCTACTTCCCCAAAACGGCACGAAGGAGGGTGGGGATGAAGATGAGAAGCAATTGAGTGCAAGAGATGAGGTTGCTGAGGAGCTTAAGAATAAGGCTGGTGCTACTGCAATGCAACCTCCCCGAAtcgGCAAGAGAGAGGGTGAGAATGAAGATGAGAAGCAAGAGAATGCAAAGAAGCAGAAGAGAGATGATGTTGCTGAGGAGCAAAAGAATAAGGAGGAAATTGTTTCAGATGATTCCTTTTCTGATTCTGAACCAGATAAGGTGGATGCTGCATCAAATGCCCAAGACTGTGacttaaaaaatgttgaaaatgattCTTTCAGTGATAGTATTGATGACGATGACGACGGTGATGACAATAGCTATGATGTTATTGTAAAGCCACATATGGTTAGAAATCCTATGAAAAGTTCAGACAATTCAGAGAACAGTGAGGAAGAAATTGAGGAAAAAGCCTCTAAAACTCCTGAAGAAAATCCTAAAATGCTAGCTACTTCGAAAGAACAAAATGCTGGATCGAAGACAATATACGCTAAAAACTTGTCGTATAGTGTGGAACGGGCTGATttGGACAATCTTTTCAAAGAGTGTGGACAAATTGTTGATATTCGTCTACACACAGATCGTGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCAAAAAAGGCTCTTGAGTTGCATAATACAGAATTGTTGAGACGTCTCATCAGAGTTGGTTTGGCTCGAGAAAAAGGTGAATATGCCTACAATAGAAGCAACTGGAGCAACTCATTACAGAAGTGTGACAATACTTCAACTGTATTTGTGAAGGGTTTTGATAGTTCCCTTGCGGAAGAAAAGaTAAAAGCTAGCCTAGAAGAGCATTTTGGTTCTTGTGGAGAGATTGTAAGGATATCAGTTCCGAAATTTCATGATTCTGGTTCTGTTAAGGGGTTTGCTCACTTGGAGTTCAAGGATGTTGACAGTATGAAGAAAGCTCTACATCTTGATCAAACTGTGCTTGGAGGTTATCACTTGTTAGTTGAAAAAGCAAAGCCTCGATGTGATAACCATGGTATAGGTGGTGGTGGTCATCAGTTGGGTGGAAGGGATGGAAGTGGCTATAGCAGCAGAGTGGATTGGGGGagaagtggtggtggtggtggtcatCAGTTTGGTGGAAGGGATGGAAGTGGCTATAGCAGCAGAGTGGATTGGGGGagaagtggtggtggtgGTGGTCATCAGTTTGGTGGAAGGGATGGAAATGGCTATAGCAGCAGAGTGGGTTGGGGGAGAAGTGATGGTGGTGGTCATCAGTTTGGTGGAAGGGATGGAAGTGACTATAGCAGCAGAGTGGGTTGGGGGAgaagtggtagtggtggtgggtGGCATTCTTCACATTTTTCTGATGAAGGTACCCGACTCTTATGCTGA | 1488 | 0.4052 | MDNSSDPKVYVATTALLLPQNGTKEGGDEDEKQLSARDEVAEELKNKAGATAMQPPRIGKREGENEDEKQENAKKQKRDDVAEEQKNKEEIVSDDSFSDSEPDKVDAASNAQDCDLKNVENDSFSDSIDDDDDGDDNSYDVIVKPHMVRNPMKSSDNSENSEEEIEEKASKTPEENPKMLATSKEQNAGSKTIYAKNLSYSVERADLDNLFKECGQIVDIRLHTDREGRFRGFGHVEFATAEAAKKALELHNTELLRRLIRVGLAREKGEYAYNRSNWSNSLQKCDNTSTVFVKGFDSSLAEEKIKASLEEHFGSCGEIVRISVPKFHDSGSVKGFAHLEFKDVDSMKKALHLDQTVLGGYHLLVEKAKPRCDNHGIGGGGHQLGGRDGSGYSSRVDWGRSGGGGGHQFGGRDGSGYSSRVDWGRSGGGGGHQFGGRDGNGYSSRVGWGRSDGGGHQFGGRDGSDYSSRVGWGRSGSGGGWHSSHFSDEGTRLLC | 495 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu2g1023 | 495 | Coils | Coil | 65 | 85 | - | - | |
Ssu2g1023 | 495 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 293 | 425 | - | - | |
Ssu2g1023 | 495 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 111 | 285 | - | - | |
Ssu2g1023 | 495 | MobiDBLite | consensus disorder prediction | 24 | 45 | - | - | |
Ssu2g1023 | 495 | CDD | RRM1_NUCLs | 192 | 268 | IPR034349 | - | |
Ssu2g1023 | 495 | SMART | rrm1_1 | 192 | 263 | IPR000504 | GO:0003723 | |
Ssu2g1023 | 495 | SMART | rrm1_1 | 290 | 366 | IPR000504 | GO:0003723 | |
Ssu2g1023 | 495 | MobiDBLite | consensus disorder prediction | 376 | 495 | - | - | |
Ssu2g1023 | 495 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 191 | 267 | IPR000504 | GO:0003723 | |
Ssu2g1023 | 495 | MobiDBLite | consensus disorder prediction | 14 | 187 | - | - | |
Ssu2g1023 | 495 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 193 | 260 | IPR000504 | GO:0003723 | |
Ssu2g1023 | 495 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 291 | 362 | IPR000504 | GO:0003723 | |
Ssu2g1023 | 495 | SUPERFAMILY | RNA-binding domain, RBD | 185 | 278 | IPR035979 | GO:0003676 | |
Ssu2g1023 | 495 | SUPERFAMILY | RNA-binding domain, RBD | 286 | 395 | IPR035979 | GO:0003676 | |
Ssu2g1023 | 495 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 293 | 425 | - | - | |
Ssu2g1023 | 495 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 111 | 285 | - | - | |
Ssu2g1023 | 495 | Gene3D | - | 275 | 408 | IPR012677 | - | |
Ssu2g1023 | 495 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 289 | 370 | IPR000504 | GO:0003723 | |
Ssu2g1023 | 495 | MobiDBLite | consensus disorder prediction | 59 | 110 | - | - | |
Ssu2g1023 | 495 | Gene3D | - | 114 | 274 | IPR012677 | - | |
Ssu2g1023 | 495 | MobiDBLite | consensus disorder prediction | 156 | 174 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu2g1023 | Ssu-Chr2 | 48247086 | 48270683 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu2g1023 | 187 | 368 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 32.086 | 5.73e-12 | 65.9 |