Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1013 ATGCCTCCGCCGCGCCGGCGCGGAGCGAACAAGGCGAAGGCCAGTGGCCACTTGAGTTTGGGCGATCTCGTGCTCGCGAAGGTTAAGGGATTCCCGTATTGGCCGGCCAAGATAAGCAGGCCCGAAGATTGGGAGAAACCCCCTGATCCAAAGaaatattttgttcaattttatggGACCAAAGAAATAGCTTTTGTTACCCCTGCGGATATTCAGGCATTCACCAATGAGGCTAAAACTAAGTTGTCCGCTCGGTGTCATGGCAAGACAAAATACTTTACCCAAGCTGTGAAGGAAATCTGTGTAGCATTTGAGGAGTTGGAGAAACAGAAAACTAGTGGTTTGAAAGAGGACACTGATGATTCACATATTGGTTCAGGAACTCCTTCTGTTGATGGGGTATTGGGTCACCTAAACGATGCCACTGATGCTGTGATATTAAATGTAGAAAAAGCAAACACATATGTAGGAGATGTTGGCTCTAATTTGGAGCAATGTACACAGAGATGTGAAGAGAGTGGTAGCCAAGGTGAAAAGCCTTCTGTATCTGGCTGTCCAATTGACAGTTCACCAGTCTTGTTGCCTGTGATTGAAAGTAAACTATCAATTGATGCAGAAATAAATAAGCATACTAGCAAATCTGACCTTGCCGAACGATCATGTCTGAAAGTGGAAGTGTCCAATATTAAGGATGTGTGCAATGTTAATGACGTAAAGCAAGCTGATAATGTACAGAGTGTTTCTACAGATGGGATCAACTCAAGAAAGCTTGTTACTGGCGCAAGGAGAAGCAAAGCTGCAGATGATAGAAAAAGACGTGGCAAAATTAGTAGAGCATTTTCGAAGGATGAAAATTGTGCAGGTTATGCTGGTCTTTCCAGGTCTGGAGAGACATTGAAAGAtgggaaaaaagggaaaaatgcATTTTCTGTTAAATCAAATTCTCCAGATGCTCTTAAATCAGACTCTGATATTAACAGTGGAAGTAAAGATAAGAACTTGCTGAAAGTTAAAACAAGTCTTAAGGTTAAAAATGAGTTGCAGGAGAGCTTCATTGGTTTTGAGGCTGAgagaaaaaaatcttttaaccaAAACAAAACCCAAGTTCATGGAAAGCGTAATTTGGGAACAAATGAAACTTTACATGCTACCAAGAAGTTGAAGTGTATGGATACCAAAGacagtaaaattttaaaatctctcTCAGTAGATGGGAAGAGTGGTTTGCCTAGCTCTCCTGTTGTTGATGACAAAGAATTCAAACAAGTAGAGTTGAAAAGGTCTACATCACGtttgaaaacagaaaaaggTTTGCCATCAAGGGGTCAGACCAGTGTTGTAGGTTCTGATGATTCGGTTCGCGAACTGCTGCCTGGGACAAAACATCATAGCCAAGTCCAGCAAGCTATTCCTGATTCTGCTAGTGTTGCTTCTGGTGAACATACAGAAATGAGTTCTCTTAGACCGAAAGGTGACACAAATAATCTTACAATTAAACAAGTACAGAGGAGACATAGAGCTGTTTGCCTTTTTGATTGTGGTGATGATGAACCCAAGACTCCTGTTCATGGAGGAGCTGCTAAAGATATTAAATCTCCTTTTGTTTCAGAGGTTATGAAGAGCAATGATGCATTCCTAGAGAACACTGATGTTGCTCAGCTGGCTACCAGAGAACCTAATGCACTTGAGGATAACCATTTTAAAGAACTCTCTTCTGAATTACATAATGACAATTTGTCAGCTAGGCATCCTCAAAAAGAGGCCAATGAGGTTTCTCCTGTCGATTTACCTCGTAGTCCTGCGAAATTAGATTCAAAGCAATTTCTTCCCAAGGTGGAAATATTGAGCTCCATCTCTCCTGTAAATTCACCTCATTCTGTTCCTACAACAACGTCAAATGCTGAGCAACATAAATCTTCCAAACGTATGCTTCAAGTTTCCAGTAATTCTACTCAAAAGAAGGGTGATAATGGGTCttcaaagaatttaaatagcatcATCTCTTCTCAGAGTCAGGGCACTACTCATAAAAAGAAACCTGCATCTTCAGGGGAAAGTTCTAAAACTACTCCAAAGACATTACCACTGGCAGTTGAAGTTCCTGCTACAACAGAAGATTTAAAGGAATTTGATGCTTTTCGTGTTGATAGAATTGAGGTGGGcacagaagaaaaaaatagtctatATACTGTTTCTAGGACTCCAGAAACTCCTAAGACTATGAAGCATCTTATTGCGGCTGCCCAGGCGAAAAGGAGACAAGTAGCTCAATCTCAATGTCATCCTCCTGGCCTTTACTATACTCAAGGGGGAACACCTAGCCCCTCTACAGTTCAGCCATTTCTGTCTGTCTCGAGCAATTTTGGCCAGGCTGATTGGCGGGGAGTTCATGAACACCCAACATTGGCTTCTCCATCAACTAATGGGTATCATTCCCCTTCTCAAAATCAACCTGATGCTGAAGAAAACGAGGAGAAAAGAGTTAGCTCAGTGCAAAGGGCTGTAGGGGGCTCTCTGAGTGGTGGTACTGAGGCTGCTGTTGCTCGTGATGCCTTTGAAGGAATGATAGAGACTTTGTCTAGGACCAAGGAAAGTATTGGGCGTGCAACACGCCTTGCCATTGATTGTGCCAAGTATGGCATTGCCAATGAGGTTGTTGAACTTCTTATCCGAAAGCTGGAAAACGAAACTAGTTTTCATCGTAAAGTGgatttgttttttcttgtcGATTCCATCACCCAGTGCTCACATAATCAAAAAGGCATTGCGGGAGCCTCCTACATCCCTACAGTTCAAGGAGGGTTGTCACGTCTTCTAGGTGCTGCTGCTCCCCCTGGGGCTAGTGCTCGTGAAAATCGTCGTCAATGTCTCAAGGTTTTAAGGCTGTGGCTTGAGAGGAAAATTTTTCCTGAATCAGTTCTTCGCCATTACATGGATGACATTGGAGTTTCAAATGATGATATGACAGTTAGTTTTTCTCTCAGGCGTCCTTCTCGAGCAGAACGGTCTCTGGATGACCCAATTAGAGAAATGGAGGGCATGCTTGTTGATGAGTATGGAAGTAATGCTACATTTCAGCTGCCTGGCTTTTTATCTTCTCATGTGtttgaagaagatgaagatgatgatttTCTGAGTAATGCATCTCCAGCAGATCCCACTCGCACTGTTGTGGATTCAGAAACTTCTACAGTTACCCCAAGTGACAAGCGTCATTGTATCTTGGAGGATGTGGATGGTGAGCTGGAAATGGAAGATGTTTCAGGTCACCTAAAGGATGAAAGACCTGTATTATTGAACAGTCCTTCTGAAATGGATTCTCAACTTCAGGGCTTGGAGAGGATTTTGGATCCACCTTCAAACATCTCTGCAGAGATACCTGATACTCTTGAGGGTTCTCCTCCATTGCCACTTGATTCACCCCCTTCTCCTCCACCTTTGCCTTCTTCATCTCCACCACcaacaccatcaccaccaccacctccattATCTTCATCACCTCCCCCACCCCCACCAGCCCCACTGTTGCAACCCCCACCTCCTCCTCTGCCACTCCCAGGCCCTTCACCTTCATTGATTCCTCAATCATCTGGACCTCTTCAGCCTCCACTTTTCTCCCAGACATCAGTGCCATCTCAATCATCGCACCAGTCATCGCCATTTTCAGGGTATCAGCAGAGTGTACCTCATGATTTTAGTGGCTCAACTAATGGcaatcaaataattcaaatggCTGGAAATTCTTTTCCTGGAGGTCACAATAGTTCAGTTGTCAAGAATGAAATATTGCAGCAGCCATCTGCTTGCTTTCCTCCAATGGCAGGCTGCAACTCTAAGGAACCTTCTGGTTTTAACCCTCCGAGGCAGTTGGAATGTGGACAAAATGATATGTATCTAAATTCTCAAGGTCCTCAATCTAATTTGCAATTTCAGCCGGCTAATCCACCATTTGCTCCAAGACACATGCATCCTGCCCTGCCCCAAAATCCATCCAATCAATATTCATATCCAAAGCCAACAAATCAGCAGCATCTTCAACATTCTTTCCATCCTCCCTTCTCATTGCCATCACTTCCAGATAGCCAGAGGCAATTTGTTGCCAATGAGCAATGGAGGATGTCATCAAGTGAATTTAACACAAACAATCAACAGGGTCTATGGATTGGGAGAAATCCTTCATGCCCTGGCCCTTCCTTTGGGCAGGAAGGTTATTTTCGGCCACCACTTGAAAGACCATCAATATACAATGTAGGTTTTCAGCATGCAAACCCTAGCAACATGCCTGCTCCTCCTATGACAGGACATGGTGTTCCTCAGATGTTGTCCTGTAGGCCAGATATTCCTGCACTTAATTGTTGGAGGCCTACTTGA 4371 0.4173 MPPPRRRGANKAKASGHLSLGDLVLAKVKGFPYWPAKISRPEDWEKPPDPKKYFVQFYGTKEIAFVTPADIQAFTNEAKTKLSARCHGKTKYFTQAVKEICVAFEELEKQKTSGLKEDTDDSHIGSGTPSVDGVLGHLNDATDAVILNVEKANTYVGDVGSNLEQCTQRCEESGSQGEKPSVSGCPIDSSPVLLPVIESKLSIDAEINKHTSKSDLAERSCLKVEVSNIKDVCNVNDVKQADNVQSVSTDGINSRKLVTGARRSKAADDRKRRGKISRAFSKDENCAGYAGLSRSGETLKDGKKGKNAFSVKSNSPDALKSDSDINSGSKDKNLLKVKTSLKVKNELQESFIGFEAERKKSFNQNKTQVHGKRNLGTNETLHATKKLKCMDTKDSKILKSLSVDGKSGLPSSPVVDDKEFKQVELKRSTSRLKTEKGLPSRGQTSVVGSDDSVRELLPGTKHHSQVQQAIPDSASVASGEHTEMSSLRPKGDTNNLTIKQVQRRHRAVCLFDCGDDEPKTPVHGGAAKDIKSPFVSEVMKSNDAFLENTDVAQLATREPNALEDNHFKELSSELHNDNLSARHPQKEANEVSPVDLPRSPAKLDSKQFLPKVEILSSISPVNSPHSVPTTTSNAEQHKSSKRMLQVSSNSTQKKGDNGSSKNLNSIISSQSQGTTHKKKPASSGESSKTTPKTLPLAVEVPATTEDLKEFDAFRVDRIEVGTEEKNSLYTVSRTPETPKTMKHLIAAAQAKRRQVAQSQCHPPGLYYTQGGTPSPSTVQPFLSVSSNFGQADWRGVHEHPTLASPSTNGYHSPSQNQPDAEENEEKRVSSVQRAVGGSLSGGTEAAVARDAFEGMIETLSRTKESIGRATRLAIDCAKYGIANEVVELLIRKLENETSFHRKVDLFFLVDSITQCSHNQKGIAGASYIPTVQGGLSRLLGAAAPPGASARENRRQCLKVLRLWLERKIFPESVLRHYMDDIGVSNDDMTVSFSLRRPSRAERSLDDPIREMEGMLVDEYGSNATFQLPGFLSSHVFEEDEDDDFLSNASPADPTRTVVDSETSTVTPSDKRHCILEDVDGELEMEDVSGHLKDERPVLLNSPSEMDSQLQGLERILDPPSNISAEIPDTLEGSPPLPLDSPPSPPPLPSSSPPPTPSPPPPPLSSSPPPPPPAPLLQPPPPPLPLPGPSPSLIPQSSGPLQPPLFSQTSVPSQSSHQSSPFSGYQQSVPHDFSGSTNGNQIIQMAGNSFPGGHNSSVVKNEILQQPSACFPPMAGCNSKEPSGFNPPRQLECGQNDMYLNSQGPQSNLQFQPANPPFAPRHMHPALPQNPSNQYSYPKPTNQQHLQHSFHPPFSLPSLPDSQRQFVANEQWRMSSSEFNTNNQQGLWIGRNPSCPGPSFGQEGYFRPPLERPSIYNVGFQHANPSNMPAPPMTGHGVPQMLSCRPDIPALNCWRPT 1456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 1134 1197 - -
Ssu2g1013 1456 CDD HDGF_related 18 101 IPR035496 -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 798 842 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 431 450 - -
Ssu2g1013 1456 Gene3D - 10 114 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 308 323 - -
Ssu2g1013 1456 SUPERFAMILY Tudor/PWWP/MBT 16 111 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 619 693 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 619 698 - -
Ssu2g1013 1456 Gene3D - 843 988 IPR008942 -
Ssu2g1013 1456 Pfam CID domain 851 975 IPR006569 -
Ssu2g1013 1456 ProSiteProfiles PWWP domain profile. 20 77 IPR000313 -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 1198 1248 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 1041 1070 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 582 605 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 297 330 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 1117 1248 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 459 493 - -
Ssu2g1013 1456 SMART 558neu5 851 982 IPR006569 -
Ssu2g1013 1456 ProSiteProfiles CID domain profile. 844 985 IPR006569 -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 1049 1069 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 435 450 - -
Ssu2g1013 1456 Pfam PWWP domain 21 104 IPR000313 -
Ssu2g1013 1456 PANTHER PROTEIN HUA2-LIKE 1 1 1456 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 1294 1313 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 1280 1333 - -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 801 817 - -
Ssu2g1013 1456 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 1456 - -
Ssu2g1013 1456 SMART PWWP_4 18 75 IPR000313 -
Ssu2g1013 1456 MobiDBLite consensus disorder prediction 461 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1013 Ssu-Chr2 47878025 47901407 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1013 2 47878025 47901407 Ssu2g1013 2 47878025 47901407 ECH