Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0914 ATGCATTTTTCGACGACGTGGCCAGAGGTTTGTTGGAGAGCAGTGTCGGCAGTGGACCAGTTTCCCAGTCTCCAATCGGGAATAGTGCAGTTCCAGAGAGTGACCGAAGGCTTCTCCGACACGCAGAGGTGGGGGTTCCTCGTGTTTGGCGGGCTGACGTGGATTTACTTGACCTCGAGGCCAGGCGTGCTCGTTGGCGCCATCGATGCGTACCTTCTGGCGCCTCTTCAACTGGGTTTGGACAGTTTGTCTGGAAGGAGGAACCTGAAGAGGAGTGACTTTGTGGTTGGAGATAAGCTTGGTGAAGGGTCGTTTGGTGTTGTCTATTCGGGTGTTTTGGTTCCGAAGAATGGGAATGGGAGTGTGGATGTGGTGCCGAAGAGGGGGAGAGGCAAGGCAACGCAAGTGGATGCCAAGTCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTTGGAATCCAAGGGGCTGAGGAGTTTGGTGATTATGAGGAGTGGTTCAATTACAGGCTATCTAGAGCAGCACCTGAAACATGTGCTGACTTCCTTGGAAGTTTCGTAGCTGATCAAACAAATTCACAGTTTACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCGTACTCTTGCCGATTACATGAAAGAGCGCAACTTTCCTTCAAACTTAGAATCTGTGATGTTTGGACGTGTCTTGCAAGGTGTAGACTCTTCTAAACGAAATGCATTGATCATCAAGCAAATAATGCGCCAGATCATTACGTCTCTTAGGAAAATTCATGATACAGGCATTGTTCACAGGGATGTAAAGCCAGCCAACTTAGTGGTTACTAAACGAGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGCGGATTGGAAAGAATTATGTTCCCAACCGTACCCTTTTGGATCCTGACTACTGCCCCCCAGAATTATATGTACTCCCAGAAGAAACACCAAGTCCACCACCAGAGCCAATTGCTGCTTTCCTTTCACCAATCCTGTGGCAGTTAAACAGCCCTGATTTGTTTGATATGTATTCAGCTGGGATTGTACTCCTGCAAATGGCAATACCATCCTTAAGGTCTCCTGCTGCTTTGAAGAATTTCAACTTGGAAATAAAAACCTGTGGATATGATTTGAAAAAATGGAGGGACTATACTCGCCTCAGGCCTGACTTCCAAATTCTAGATAGTGAATCTGGTAGGGGGTGGGACTTAGCAACAAAGCTTGTATCTGAGAGAAGTTCCCTAAGAAGAGGACGTTTATCTGCTGCTGCAGCTCTGAGACATCCTTATTTTCTTCTGGGTGGTGATCAGGCAGCTGCAGTCCTTTCAAAATTAAGCTTAAGCAGAAAGTGA 1374 0.4636 MHFSTTWPEVCWRAVSAVDQFPSLQSGIVQFQRVTEGFSDTQRWGFLVFGGLTWIYLTSRPGVLVGAIDAYLLAPLQLGLDSLSGRRNLKRSDFVVGDKLGEGSFGVVYSGVLVPKNGNGSVDVVPKRGRGKATQVDAKSKDKVILKKVKVGIQGAEEFGDYEEWFNYRLSRAAPETCADFLGSFVADQTNSQFTKGGKWLVWKFEGDRTLADYMKERNFPSNLESVMFGRVLQGVDSSKRNALIIKQIMRQIITSLRKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRTLLDPDYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPSLRSPAALKNFNLEIKTCGYDLKKWRDYTRLRPDFQILDSESGRGWDLATKLVSERSSLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLSRK 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0914 457 ProSiteProfiles Protein kinase domain profile. 94 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0914 457 Gene3D Transferase(Phosphotransferase) domain 1 236 440 - -
Ssu2g0914 457 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 17 455 IPR044803 GO:0004674|GO:0009579
Ssu2g0914 457 SMART serkin_6 94 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0914 457 Gene3D Phosphorylase Kinase; domain 1 80 205 - -
Ssu2g0914 457 Pfam Protein kinase domain 245 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0914 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Ssu2g0914 457 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 17 455 - -
Ssu2g0914 457 SUPERFAMILY Protein kinase-like (PK-like) 90 439 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0914 Ssu-Chr2 46057145 46060004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0914 94 294 MAP Kinase Kinase Kinase AT3G13530 24.510 2.17e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Ssu2g0914 Pkinase 1.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0914 - - gmx:100788727 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0938 3 22314622 22317815 Ssu2g0914 2 46057145 46060004 PCT