Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0511 ATGGCAAGAGCAGCTTGCAATCACCTTCACGTGGTTCTCAGTTTAGTTCATCCTTTGAAGTCAACCCTCTTCGCAAATCACACTCTTTCCACCACACGCACTCGCTTCAATGACGTTCAGCGAAGgttctcttcttcttcatccaaGATACGCATGAGCCTCAGGGCCGGTATCGTTGGCCTCCCTAACGTTGGCAAGTCCACTCTCTTCAATGCCGTTGTGGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCTGATTCTCGTCTCCATGTGCTCTCTGATCTCAGCAAATCTCAACGAGCAGTTCCAGCATCAATAGAATTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGCCAAGGCgagGGGTTGGGTAATAAGTTTTTGTCACATATTCGTGAGGTGGACTCTATACTTCAGGTTGTACGATGTTTTGAAGACAATGACATTGTTCATGTGAATGGGAAAGTTGACCCCAAATCTGATATTGACGTTATCAACTTGGAGCTTGTTTTCTCGGACTTGGACCAGATTGATAAAAGAATGGATAAACTAAAGAAGAGCAAGGCAAAGGATTCACAATCTAAACTCAAGGAAGAGGCAGAAAAGTCTGCTTTGGAAAAGATTTGTGAGGCGCTTATGGATGGAAAACCTGCACGATCTGTGTCCTTAACAGATTTTGAAGGGGATGCTGTAAAGCATCTCTGCTTGCTCACCATGAAACCTACTATATATGTGGCAAATGTTGCAGAATCTGATCTAGCTGATCCTGCAAATAACAATTATGTCAAGGATGTTACAAATGTTGCATCTGAGTTGCAGTCAAGAATTGTAACAATTTCAGCGCAGGTTGAGGCAGAGCTTTCTGAACTACCAATTGAAGAAAGACAAGAATATTTGAAATCTCTTGGTGTTAATGAAAGTGGTCTTGGGAACCTAATTAGGACAACTTATGACCTTTTGGGGCTGCGAACTTACTTTACTTCTGGTGAGAAGGAGACAAAAGCATGGACAATACTTGcagGAATGACTGCACCTCAAGCTGCTGGAGTTATTCACTCTGACTTTGAGAAGGGTTTCATCCGAGCAGAGACAgtatCTTATGATGATTTTGTTGCTGCTGGTTCGCTTGCTGCAGCACGAGAGAAAGGACTGTTGAGATCTGAAGGTAAAGACTACGTCGTACAAGAAGGAGACGTCATGTTGTTTCGATTCAATGTTTAG 1266 0.4186 MARAACNHLHVVLSLVHPLKSTLFANHTLSTTRTRFNDVQRRFSSSSSKIRMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIDKRMDKLKKSKAKDSQSKLKEEAEKSALEKICEALMDGKPARSVSLTDFEGDAVKHLCLLTMKPTIYVANVAESDLADPANNNYVKDVTNVASELQSRIVTISAQVEAELSELPIEERQEYLKSLGVNESGLGNLIRTTYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGLLRSEGKDYVVQEGDVMLFRFNV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0511 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 359 IPR027417 -
Ssu2g0511 421 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 54 336 IPR031167 GO:0005525
Ssu2g0511 421 Gene3D - 100 420 IPR012675 -
Ssu2g0511 421 TIGRFAM TIGR00092: GTP-binding protein YchF 52 421 IPR004396 GO:0005524|GO:0005525|GO:0016887
Ssu2g0511 421 Pfam Protein of unknown function (DUF933) 337 420 IPR013029 -
Ssu2g0511 421 CDD YchF 56 335 IPR041706 -
Ssu2g0511 421 Pfam 50S ribosome-binding GTPase 56 168 IPR006073 GO:0005525
Ssu2g0511 421 PANTHER OBG-LIKE ATPASE 1 52 421 - -
Ssu2g0511 421 CDD TGS_YchF_OLA1 335 419 IPR013029 -
Ssu2g0511 421 Hamap Ribosome-binding ATPase YchF [ychF]. 53 421 IPR004396 GO:0005524|GO:0005525|GO:0016887
Ssu2g0511 421 PRINTS GTP1/OBG GTP-binding protein family signature 139 157 IPR006073 GO:0005525
Ssu2g0511 421 PRINTS GTP1/OBG GTP-binding protein family signature 78 96 IPR006073 GO:0005525
Ssu2g0511 421 PRINTS GTP1/OBG GTP-binding protein family signature 122 137 IPR006073 GO:0005525
Ssu2g0511 421 PRINTS GTP1/OBG GTP-binding protein family signature 56 76 IPR006073 GO:0005525
Ssu2g0511 421 Gene3D - 54 336 IPR027417 -
Ssu2g0511 421 SUPERFAMILY TGS-like 337 418 IPR012676 -
Ssu2g0511 421 Gene3D - 165 255 IPR023192 -
Ssu2g0511 421 PANTHER OBG GTPASE FAMILY 52 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0511 Ssu-Chr2 29457400 29481271 Dispersed