Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0508 ATGAAGGGCAGTGATCTCATGATGGACGACAACGGGGACAAAGGAAGGTTCTTGAACATGGTAGTTGCCACCTACAAGGACTTCTACGATCAAGTCAGAATGTGTTTCAGTGCAGAAGGGAAACCTCATGTCTTGCTTGTTCTCACGTACTTGTGGTTGTGGTGGACTACTTGTATGGATGTTGAAGCCACCAATGATAGTTTGAAGCCAGGTGATACGCTGGATGCTACAGAAGAACTATGTTCAGACAACGGTAAATATTGCTTGAATTTTAGCCAAACATTTGATGATGAGGATGTAGCTTACTTACAAATATTTTCCCAAAAAGATGATTGGGCGGTGTGGGTTGCTAATAGAAACCAACCTGTTGACTCAAATTCTGCAGTTCTATCACTAAACTACTCTGGTGTGctaaaaatagaatctcaaCGTGGGAAACCAATAATCCTTTATTCTCCACCTCAAGCTATCAACAACACAGTGGCCACCTTGTTGGACACAGGCAACTTTGTGCTTCAACAACTTCACCCCAATGGGTCTACAACGGGTGTGTTGTGGGAAAGTTTTGATTTACCCACTGACACTTTGCTCCCTGGGATGAAGTTAGGTGTGAATCACAAAACTGGTCGTAACTGGTCACTGGTTTCATGGTTGAGTAAACATGTCCTTACTCCTGGTCCATTCAGGCTTGAATGGGAACCCAATACAAGACAGTTGATCATCAAGCGAGGAGAACGGGTTTACTGGGCTAGTGGAAACGAATTCGAGCACATTTCAGGAGAGGCTCAGCATGAGATTGTCTCAAATGAAACTGGAGACTACTTCATattgaaaaaatcaaaagaagagCTTACAAAATGGACACTATTGTCAACTGGGCAAATGATAAATCGGAATGGAGGTGATGTTGCAAGGGCTGATAGGTGTTATGGGTGCAATACAGATGAAGGGTGCCAAAAGTGGGAGGAGATACCCCACTGCAGGAACCATGGTGATGTGTTTCAGAACGTGCAAGGTTACCTCAATCCGGAGATGACAAGTGATGAAACGAATTCAAGTTATAGTATAAATGATTGCCAGGCTATTTGCTGGAGCAACTGCAGCTGCGTTGGATTCACTTATTATCATGAAAATGAAACTGGCTGTACCTTCTTATGGGATTCAATGAAGGGTACCAATACTGCAAGCGAGGGTGATCAATTTTACGTGTTACGAAGGAGCAACCGTCACAAACagaataaaacaaagagaatgGAGATTGAGAAGCAAGAAGTAGCAGCTTCCAGTAAATCCTCCAACAAACTAGAATTTGATTTAAAGGAGGAACATGACTTGAAAGTATTTAGTTATGCATCACTAATGGAGGCTACAAATGGCTTTTCATCTGGAAACAAGTTAGGACAGGGAGGCTTTGGACTAGTTTATAAgGGAATTCTATCTACAAGGCAAGAGGTTGCTGTCAAAACACTTTCCAAATCTTCTGGACAAGGACTTATcgaatttaaaaatgaattaacacTCATATCTAAACTCCAACACACAAATTTGGTTCAGCTACTCGGTTACTGCATTCATGAAGAAGAGCGGATTTTGATCTATGAGTATATGCCTAACAGAAGCTTGGACTTCATTTTATTTGATTCTACTCAAAGTCAGTTGCTGGATTGGAATAAGCGTTTTCTCATAATTGAAGGAATTGCTCAAGGATTACTATACCTTCACAAATACTCAAGACTTAGAATCATTCACAGAGACTTGAAGGCTAGCAACATTCTCCTTGATGAGAATATGAACCCCAAAATTTCTGATTTCGGTACAGCAAAAATGTTCACACAACAGGATTCTGAAGCAAATACCAGCAGGATTGTTGGGACGTAtGGTTACATGTCTCCGGAGTATGCTATGGAAGGAGTTTTCTCTACAAAATCTGATGTGTACAGCTTTGGAGTGTTACTCTTTGAAATTGTTAGCGGTAAAAGAAACAATAGCGTCTACACTGAAGAACGACCACTCAATCTGGTAGGAcatGCTTGGGAGCTATGGAAAAAAGGCGAGCCTCTTAAGGTGGTGGATCTAGCATTAAATGATTCATTTTCAGAGGATGAAGTGCTAAGATGTGTTCATGCTGGTCTATTATGTGTGGAAGAAAATGCAGATGATCGCCCCTCCATGTCCAACATTGTATCTATGTTAACAAACAAGAGTAAAGTGACTTCTTTACCTAAAAAACCAGCATATTATCTTAGAACAAAAGTGTTGGGGGAAGAAACGTCTACTAAAGAATTTGGTGTAGATTACATACACGAAAATTCCCTTTCTTATGTGTGTTCAATTTga 2337 0.3958 MKGSDLMMDDNGDKGRFLNMVVATYKDFYDQVRMCFSAEGKPHVLLVLTYLWLWWTTCMDVEATNDSLKPGDTLDATEELCSDNGKYCLNFSQTFDDEDVAYLQIFSQKDDWAVWVANRNQPVDSNSAVLSLNYSGVLKIESQRGKPIILYSPPQAINNTVATLLDTGNFVLQQLHPNGSTTGVLWESFDLPTDTLLPGMKLGVNHKTGRNWSLVSWLSKHVLTPGPFRLEWEPNTRQLIIKRGERVYWASGNEFEHISGEAQHEIVSNETGDYFILKKSKEELTKWTLLSTGQMINRNGGDVARADRCYGCNTDEGCQKWEEIPHCRNHGDVFQNVQGYLNPEMTSDETNSSYSINDCQAICWSNCSCVGFTYYHENETGCTFLWDSMKGTNTASEGDQFYVLRRSNRHKQNKTKRMEIEKQEVAASSKSSNKLEFDLKEEHDLKVFSYASLMEATNGFSSGNKLGQGGFGLVYKGILSTRQEVAVKTLSKSSGQGLIEFKNELTLISKLQHTNLVQLLGYCIHEEERILIYEYMPNRSLDFILFDSTQSQLLDWNKRFLIIEGIAQGLLYLHKYSRLRIIHRDLKASNILLDENMNPKISDFGTAKMFTQQDSEANTSRIVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLFEIVSGKRNNSVYTEERPLNLVGHAWELWKKGEPLKVVDLALNDSFSEDEVLRCVHAGLLCVEENADDRPSMSNIVSMLTNKSKVTSLPKKPAYYLRTKVLGEETSTKEFGVDYIHENSLSYVCSI 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0508 778 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 44 415 - -
Ssu2g0508 778 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 402 775 - -
Ssu2g0508 778 Pfam D-mannose binding lectin 114 217 IPR001480 -
Ssu2g0508 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
Ssu2g0508 778 SUPERFAMILY alpha-D-mannose-specific plant lectins 113 219 IPR036426 -
Ssu2g0508 778 SUPERFAMILY Protein kinase-like (PK-like) 444 748 IPR011009 -
Ssu2g0508 778 ProSiteProfiles Protein kinase domain profile. 460 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0508 778 SMART serkin_6 460 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0508 778 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 44 415 - -
Ssu2g0508 778 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 402 775 - -
Ssu2g0508 778 SMART blect_4 65 192 IPR001480 -
Ssu2g0508 778 CDD STKc_IRAK 466 733 - -
Ssu2g0508 778 Pfam Protein tyrosine and serine/threonine kinase 462 730 IPR001245 GO:0004672|GO:0006468
Ssu2g0508 778 Pfam PAN-like domain 327 386 IPR003609 -
Ssu2g0508 778 Gene3D Transferase(Phosphotransferase) domain 1 536 745 - -
Ssu2g0508 778 PIRSF SRK 301 433 IPR024171 GO:0004674
Ssu2g0508 778 PIRSF SRK 39 308 IPR024171 GO:0004674
Ssu2g0508 778 PIRSF SRK 399 775 IPR024171 GO:0004674
Ssu2g0508 778 Gene3D Phosphorylase Kinase; domain 1 418 535 - -
Ssu2g0508 778 ProSiteProfiles PAN/Apple domain profile. 327 408 IPR003609 -
Ssu2g0508 778 ProSiteProfiles Bulb-type lectin domain profile. 65 185 IPR001480 -
Ssu2g0508 778 Gene3D - 59 189 IPR036426 -
Ssu2g0508 778 ProSitePatterns Protein kinases ATP-binding region signature. 466 488 IPR017441 GO:0005524
Ssu2g0508 778 SMART ntp_6 329 406 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0508 Ssu-Chr2 29006909 29014559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0508 448 750 Receptor kinase-like Gene Family AT3G45860 57.705 1.21e-121 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu2g0508 PK_Tyr_Ser-Thr 9.1e-49 CL0016