Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0504 ATGGAAGACATAAACAGGCTGTTATCCTTCTATGTGAATGAAAGTATTAACCATGATTTCGCCATCCGAAGGTATTGCCCTGCAAGAATGGAGCAAGGGCAAGGAGGAGACTGCCAAGACCAAGAGGCAGTAGTTTTTGACGATACTGAATTATGTTCTTCTGATGCTACCAGCAGCACTCCTTGTTTGGCTTCATCAAAGGTTGATGACTTTGTTGATAGCTTCATCAACATGGATCAGTATGAGTATGAGAATGAAGATCAAGGGTCCCAAGAGAAGCATCAAAGTTTTGATCACTTTGTGGTGAATGATGAGGATGAGGCTGATGCATACTCCATGGTGAATGGTGTCTTTGGATATGTTCCAACCACCTTGGAGGATTCAGAATTAGAGATCGATGAAAATCTCCCAACAGCCATGTTGGAGGAAGAGGTTGAAATGGGTGGCTCTTTTGGTGCTATACCTGAGCTTGTGCCTTGTGCACAAGAGGTCAGCCTTGGTGTGGACGAAGGATTAGATTTGGTTCACATGCTACTGGCCTGTGCTGAAGCTGTGGGGTGCAGAGACAACCAGCAGGCAGAGTTTCTGCTTAGCAGAATTTGGGCTTTGGCAAGTCCTTCAGGAGACTCGCTGCAGCGAGTCTCCTACTGTTTTGCCACAGGATTGAAGTGCAGATTATCACTTCTTCCTCATAATGTCATTGCAAATGGTACACTCACAAGTATTTCTATGGATGTGCCTTTGATCACTAGGGACAATAAGCTGGAAGCTTTTCAGCTTCTTTACCAAACCACACCTTACATTGCCTTTGGTTTCATGGCTGCAAATGAAGCCATATGCCAAGCATCACAAGGAAAGTGTTCAATACACATAGTTGACTTAGCAATGGAGCATACCCTTCAGTGGTCTTCCCTTATAAGGGCCCTTGCCTCAAGGCCTGAGGGGCCTCCAATGCTCCGGATCACCGGATTAACCGGCATTGAAGACAACCCTAAACTTCAAAGTAGCATGAATGTGCTTGTGGAGGAAGCAAGCTCCTTGGGAATGCATCTTGAATTCCACACAATTTCTGAGCCAGCAACTCCATCTATTCTTACTACGGAGAAGCTAAACTTGAGAAAAGGTGAAgctttatttattaatagtatCTTGCAGTTGCACAAATATGTCAAAGAAAGTAGAGGCTATCTGAAGGAAATTCTCCTATCAATAAAGAAGTTAGGTCCAACTGCACTTACAGTGGAAGAGCAAGACACAAACCATAATGGACCTTTCTTCCTTGGGAGATTTTTGGAATCACTGCACTATTACTCAGCCATATTTGATTCTCTTCAGGCATGTATGCCAAGAAATAGCCAACACAGGATGAAAATAGAGGGATTACACTTTGCAGAGGAAATCCGAAATATTGTAGCTTATGAGGGTCCAGATAGAATAGAAAGACATGAAAGGGTAGACCAATGGAGAAGGCAATTAGGCCGGGCAGGATTTCAGGTAATGCCACTGAAGTGCACAAGTCAAGTTAGAATGATGCTTTCTGTTTATGATTGTGATGGATATACATTGTCCAGTGAGAAGGGCAACCTTCTACTTGGGTGGAAAGGAAGGCCAGTAATGATGGCTTCTGCATGGCAAGTGGCAAGTGTGTGA 1650 0.4358 MEDINRLLSFYVNESINHDFAIRRYCPARMEQGQGGDCQDQEAVVFDDTELCSSDATSSTPCLASSKVDDFVDSFINMDQYEYENEDQGSQEKHQSFDHFVVNDEDEADAYSMVNGVFGYVPTTLEDSELEIDENLPTAMLEEEVEMGGSFGAIPELVPCAQEVSLGVDEGLDLVHMLLACAEAVGCRDNQQAEFLLSRIWALASPSGDSLQRVSYCFATGLKCRLSLLPHNVIANGTLTSISMDVPLITRDNKLEAFQLLYQTTPYIAFGFMAANEAICQASQGKCSIHIVDLAMEHTLQWSSLIRALASRPEGPPMLRITGLTGIEDNPKLQSSMNVLVEEASSLGMHLEFHTISEPATPSILTTEKLNLRKGEALFINSILQLHKYVKESRGYLKEILLSIKKLGPTALTVEEQDTNHNGPFFLGRFLESLHYYSAIFDSLQACMPRNSQHRMKIEGLHFAEEIRNIVAYEGPDRIERHERVDQWRRQLGRAGFQVMPLKCTSQVRMMLSVYDCDGYTLSSEKGNLLLGWKGRPVMMASAWQVASV 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0504 549 Pfam GRAS domain family 174 545 IPR005202 -
Ssu2g0504 549 ProSiteProfiles GRAS family profile. 165 545 IPR005202 -
Ssu2g0504 549 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 3 547 - -
Ssu2g0504 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 547 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0504 Ssu-Chr2 28916659 28918308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0504 169 549 GRAS Transcription Factor Family AT1G66350 37.887 1.33e-73 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu2g0504 GRAS 3.6e-103 CL0063