Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0503 ATGTCGGTGCTGATCGTCACGAGCTTAGGGGACCTTGTCGTCGATTTGCACACCAACAAATGCCCCCTGACCTGCAAAAATTTCTTGAAGCTTTGCAGGACTAAGTACTATAATGGGTGTTTATTTCACACTGTTCAAAAGGATTTTACTGCCCAAACTGGTGATCCAACTGGCACGGGAACTGGTGGTGATTCAGTTTACAAGTTTCTTTATGGTGATCAAGCTCGGTTTTTCAACGATGAAATTCATATTGATTTGAAGCATTCCAAGACCGGAACGGTTGCCATGGCAAGTGCTGGAGAGAATCTGAATGCTTCACAGTTTTATATCACTCTGCGTGATGACCTTGATTACCTTGACGGAAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTAACTAGAATAAATGAGGCTTATGTGGATGAAAAGGGACgaccatataaaaatataagAATCAAGCATACATACATCCTGGAGGATCCTTATGATGATCCTTCTCAGCTATCTGAGTTCATTCCTGAAGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAAGTGCGCCTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAATCCAGCAGAACTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTaTTGGCGATATTCCTGATGCTGAGATTAAGCCTCCAGACAATGTATTGTTTGTCTGTAAATTGAATCCAGTTACTGAGgatGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACAGGCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGGTCACTATATAGGCAAAAAGATCAAAAGGGTAAAGGTGGTGGTTGCTTCAAATGTGGTTCTACAGATCATATTGCTAAAGATTGCACAGGAGATGCTACAATGAAACAACCACAAGCAAAATACATCTTAAAGGATAATAATGCCCAACGTGGGGGAGATAATGCGAGATATGAAATGGTTTTTGATGGAGATAACCCAGAAAGTCCAAGGCAAGATGTAAAACACCAAAGGCATGACAGGGATGACCCAGTTGAAAGAAAAGGTaggaaggaaaattttaaagatcATAGAAGTCATAGGGATCAGGATATGGTAGACTCGTACAACAGAGATAGGTACGGTGATAGAAGCAGGGGGCATGGAGGAAATGGAGACAACAAAGCACTCTCTGAAAGAGGTGCAAGAGATGCTAGAGATTTGGATTCCCATgctaaaaagaaagagagagataggcACACGGGAAGAAATAGAGATGATGATTACAAGCGGAAAGATGAACGAGACTCAAGAAAAAGAGACGATGATAGCTCCAAGTGGAAAGATGAGCGAGACTCAAGAAAAAGAGACAAAGATGATAGCTACAGAGAAAGACGAACTAGTTGGGATGATAGGAGAAACACAGATTCTAGCCATTTGGAGAGAAGGAATGACAGAGATTATAGGAAGAGACCTGAAGACGGTGGAAAGAAAGATGTGAAGATTGATTCCGGACGAAGAAAAAGAAGTCCAGGTGAGGATTACAAAAATGGAAGGGAGGATGAAGATTACAGACATAGAAGGGAAGAACGAGGGCATAAAAGACAAGATATTGAAACTGATGAGGATTATAAAAGCAGAAGGGAGGATTCAGATTACAAACGTAGAAGGGAGGAACGTGGACATAAAAGACAAGATGTTGAATCTGATGATTATTCTCATAGGCGGCATCACGGTGACAGGAGATGA 1923 0.3999 MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCRTKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKGRPYKNIRIKHTYILEDPYDDPSQLSEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSLYRQKDQKGKGGGCFKCGSTDHIAKDCTGDATMKQPQAKYILKDNNAQRGGDNARYEMVFDGDNPESPRQDVKHQRHDRDDPVERKGRKENFKDHRSHRDQDMVDSYNRDRYGDRSRGHGGNGDNKALSERGARDARDLDSHAKKKERDRHTGRNRDDDYKRKDERDSRKRDDDSSKWKDERDSRKRDKDDSYRERRTSWDDRRNTDSSHLERRNDRDYRKRPEDGGKKDVKIDSGRRKRSPGEDYKNGREDEDYRHRREERGHKRQDIETDEDYKSRREDSDYKRRREERGHKRQDVESDDYSHRRHHGDRR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0503 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Ssu2g0503 640 SUPERFAMILY RNA-binding domain, RBD 229 338 IPR035979 GO:0003676
Ssu2g0503 640 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Ssu2g0503 640 SMART rrm1_1 244 317 IPR000504 GO:0003723
Ssu2g0503 640 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 504 IPR035542 -
Ssu2g0503 640 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Ssu2g0503 640 Gene3D - 1 173 IPR029000 -
Ssu2g0503 640 Pfam Zinc knuckle 340 355 IPR001878 GO:0003676|GO:0008270
Ssu2g0503 640 CDD cyclophilin_RRM 4 169 IPR035538 -
Ssu2g0503 640 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Ssu2g0503 640 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Ssu2g0503 640 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Ssu2g0503 640 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Ssu2g0503 640 MobiDBLite consensus disorder prediction 455 640 - -
Ssu2g0503 640 Gene3D - 178 324 IPR012677 -
Ssu2g0503 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Ssu2g0503 640 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Ssu2g0503 640 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Ssu2g0503 640 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Ssu2g0503 640 CDD RRM_PPIL4 240 322 - -
Ssu2g0503 640 MobiDBLite consensus disorder prediction 389 448 - -
Ssu2g0503 640 MobiDBLite consensus disorder prediction 383 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0503 Ssu-Chr2 28873215 28889473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0503 7 166 U-box Gene Family AT5G67530 41.250 3.09e-32 130