Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0501 ATGGAATCACCGTTCAAGCCAGAGATACTGAAGGGGAAGGTTGCTCTCGTCACAGGCGGAGCCTCTGGAATTGGCTTCGAAATATCCACCCAACTTGGCAAACATGGGGCGTCCGTCGCTCTCATGGGTCGCCGCAAACAAATCCTTCAGTCTGCTGTCTCCGTTCTCCAATCACTCGCCATTCCCGCGGTTGGGTTTGAGGGGGATGTGCGGAAGCAAGAGGATGCAGCGAGGGTGGTGGAATCCACGTTCAAGCGTTTTGGAAGGATTGACATACTTGTCAATGCTGCAGCAGGGAACTTTCTTGTTTCCGCAGAGGATTTGTCCCCAAATGGCTTTCGAACAGTTCTGGACATTGATTCTGTTGGCACATTCACAATGTGCCATGAAGCACTAAAATATCTCAAGAAAGGGGGAGAAGGAAGGAGCAGCTCTTCTGGTGGGGGAACAATAATAAACATTAGTGCTACCTTGCATTATACAGCTTCTTGGTATCAAATTCACGTGTCTGCAGCAAAGGCAGCTGTTGATGCCACTACAAGAAACTTGGCACTAGAATGGGGAACTGACTATGATATTAGAGTCAATGGGATTGCACCAGGCCCAATAAGTGACACTCCTGGCTTGAGTAAACTGGCTCCTGATGAAATAAGTAGCAAAGCCAGAGATTACATGCCGCTGTATAAACTTGGGGAAAAATGGGATATTGCCATGGCTGCACTTTTCCTAGTATCAAATGCAGGAAAATTCATTAATGGTGACACTCTCATAGTTGATGGAGGACTTTGGCTGAGCCGGCCTCGTCATTTACCAAAAGAGGCTGTAAAGCAGGTATCTCGAGCAGTAGAAAAGAGATCCAGAAATGCACCAGTTGGTGTTCCAAAAAGCAAGCTGTGA 897 0.4738 MESPFKPEILKGKVALVTGGASGIGFEISTQLGKHGASVALMGRRKQILQSAVSVLQSLAIPAVGFEGDVRKQEDAARVVESTFKRFGRIDILVNAAAGNFLVSAEDLSPNGFRTVLDIDSVGTFTMCHEALKYLKKGGEGRSSSSGGGTIINISATLHYTASWYQIHVSAAKAAVDATTRNLALEWGTDYDIRVNGIAPGPISDTPGLSKLAPDEISSKARDYMPLYKLGEKWDIAMAALFLVSNAGKFINGDTLIVDGGLWLSRPRHLPKEAVKQVSRAVEKRSRNAPVGVPKSKL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0501 298 Gene3D - 1 268 - -
Ssu2g0501 298 MobiDBLite consensus disorder prediction 277 298 - -
Ssu2g0501 298 CDD TER_DECR_SDR_a 10 264 - -
Ssu2g0501 298 PANTHER PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE 1 298 IPR045017 GO:0008670|GO:0009062
Ssu2g0501 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Ssu2g0501 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Ssu2g0501 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Ssu2g0501 298 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 160 - -
Ssu2g0501 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 264 IPR036291 -
Ssu2g0501 298 PRINTS Glucose/ribitol dehydrogenase family signature 191 208 IPR002347 -
Ssu2g0501 298 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Ssu2g0501 298 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Ssu2g0501 298 PRINTS Glucose/ribitol dehydrogenase family signature 14 31 IPR002347 -
Ssu2g0501 298 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Ssu2g0501 298 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Ssu2g0501 298 Pfam Enoyl-(Acyl carrier protein) reductase 19 262 - -
Ssu2g0501 298 PANTHER PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE-LIKE 1 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0501 Ssu-Chr2 28833811 28837955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0501 1 298 Acyl Lipid Metabolism Gene Families AT3G12800 78.859 6.02e-166 461