Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0500 ATGGAACTCGCCATTCCCCACAACCCAAACCCTCTTCTCGTTTCATCGTCACCACTCTCTCGAAACTCCAGCGTTTTCGCGTTAACCGCACCGCGCGGCCGCAGGAAGCTCAGGTTTCGAGTTTCCGCCACCGCGGAGCCCGACGGGCCGTCGTGGTCGCAATCGCTGCGGCGCGGTTCGCGGCGGTTTTGGGTGAAGTTTGGGGAAATGGTGAAGAAGGAGACGGGTCTCGACTTCGAAGGTGGCGGCGTGAAGAAGGTTGGCGAGTTTGTGAGCGGAGATGAATTGCGAAGGTTTGGGACTCGGTGGGCGTCGCAGTTTGTCGATTGGAATAACTGGGAACGGTGGAAGAATATCAAGGACTGGGAACCTAAGCGAATTGGTTCTTTGGTTctttacatttttgttatgGCATTTGCTTGTAGAGGAGTATATGTAGCAATTCGAGCACCTTTCCTAAATCGCCAGAAAAAAGAATTGACAGAAGCTTACATGGAAGCATTAATTCCTGAGCCATCCCCTACCAACATTAAAAGATTTAAGAAGGGTATGTGGAAGAAGACAATGCCAAAAGgcctaaaaatgaaaaagcttaTTGAAAGACCTGATGGAACGCTTGTTCATGATACTTCTTATGTTGGAGAGGATGCATGGGAGGATGATCAAGAGGCTCCTGAGGAGCGTGTAAAGCAAATTATAGAGGATGATGAAAGGTTAaacaaagaagagaagaaagaactAACAAAAGGCTTGGGCATTTCAGGTGAAGTTCAAACTAAGGGCACATGGCGTGAGAGACTTCTTAAATGGAGGGAGATCCTTAGAAAAGAACGTTTTGTAGAGCAATTGGATTCCTTAAATGCCAAATATGTAGTTGAATTTGACATGAAAGAGGTTGAAAATAGCCTTCGCAAGGATGTGGCAGAAAACGTGACAGACACTCAGGGTACAAGGGCTCTGTGGATAGCTAAGAGATGGTGGCGCTATCGCCCTAAACTTCCTTACACTTATTTCCTCAACAAACTTGATAGTTCTGAGGTAGCAGCTGTTGTCTTTACCGAAGACTTGAAAAGATTGTATGTGACAATGAAAGAAGGCTTTCCACTGGAATTTGTTGTTGATATCCCTCTTGATCCTTATCTGTTTGAGATTATTACAAGTTCTGGAGTTGAAGTAGATCTCCTTCAGAAGCGACAGATCCATTATTTCATGAAGGTTGTGATTGCATTAGTACCTGGAGTACTGATTCTCTGGCTTATAAGGGAGTCTGTGATGCTTCTACACATTACTTCCAAGCGGTTTCTTTACAAGAAGTATAATCAACTCTTTGATATGGCTCATGCAGAAAATTTCATTATGCCAGTTGGAGATGTGGGTGAAACAAAATCAATGTACAAGGAAGTTGTGTTGGGGGGTGACGTTTGGGATCTTCTTGATGAGTTGATGATCTATATGGGAAATCCTATGCAGTTCTACGAAAGGGACGTGCAGTTTGTTCGGGGTATTTTACTCTCTGGACCTCCAGGAACAGGAAAAACGCTTTTTGCTAGGACACTTGCAAAAGAAAGTGGTTTACCTTTTGTATTTGCTTCGGGCGCTGAGTTCACAGATAGTGAAAAAAGTGGAGCAGCTAGGATCAATGAGATGTTTTCCATTGCTAGGAGAAATGCACCTTGTTTTGTATTTGTGGATGAAATAGATGCTATTGCTGGAAGACATGCTAGGAAGGATCCACGAAGAAGGGCAACTTTTGAGGCTCTTATTGCACAGCTTGATGGAGAGAAGGAAAAAACTGGTGTTGACCGTCTATCCCTCAGACAAGCTATCATATTCATCTGTGCCACAAATAGGCCAGATGAATTAGATCTTGAGTTTGTTCGTCCTGGACGTATTGATCGTCGTCTATACATTGGTTTGCCTGATGCAAAGCAGAGAGTCCAAATTTTTGGTGTGCACAGTTCCGGAAGGCAACTTGCAGAGGATGTGAATTTTGAAGAGCTTGTCTTCCGTACTGTTGGATTCTCTGGAGCGGATATAAGAAACCTTGTCAATGAAGCAGCAATAATGTCGGTGAGAAAAGGGCATTCCAAAATTTTCCAGCAAGATATTATTGATGTACTGGATAAACAACTGCTTGAGGGTATGGGTGTCCTTCTGACAGAGGAAGAGCAACAAAAATGTGAACAAAGGGTATCTTTTGAAAAGAAGAGACTGCTTGCTGTTCATGAAGCTGGTCACATAGTGCTAGCTCACTTATTTCCTCGGTTTGACTGGCATGCATTTTCACAGCTCCTTCCTGGGGGAAAGGAAACTGCAATATCTGTATTCTATCCTCGAGAAGATATGGTAGACCAAGGTTATACAACATTTGGTTACATGATGATGCAAATGGTAGTGGCCCATGGTGGTCAATGTGCCGAACGCATTGTATTTGGTGATGATATAACTGATGGAGGAAGAGATGATCTTGAAAAGATAACTAAGATTGCTAGGGAGATGGTTATCAGccctcaaaataaaaagttgggGTTAATAGCTTTAACAAAAAGGGTTGGCTTAGTTGATCGACCAGACAGCCCAGATGGAGAATTGATAAGATATAGATGGGACGACCCTCAAGTAATTCCTGCTAATATGACACTAGAGGTGTCTGAGCTTTTCACAAGGGAGTTGACAAGGTACATTGAGGAAACTGAAGAACTTGCAATGAATGCTTTAAGGAATAATAGGCACATCCTGGACTTGATTACAAGCGAACTATTGGAGAGGTCAAGAATAACTGGATTGGaggttgaagaaaaattgaaggaaCTGTCTCCAGTAATGTTTGAGGACTTTGTGAAGCCATTCCAGATAAACCCAGATGAGGAGGGACCATTACGGCATAATGATCGTCTACGATATCAATTACCCGACTTATATCCTGCTCCTCTCCATAGATGTTGA 2946 0.4206 MELAIPHNPNPLLVSSSPLSRNSSVFALTAPRGRRKLRFRVSATAEPDGPSWSQSLRRGSRRFWVKFGEMVKKETGLDFEGGGVKKVGEFVSGDELRRFGTRWASQFVDWNNWERWKNIKDWEPKRIGSLVLYIFVMAFACRGVYVAIRAPFLNRQKKELTEAYMEALIPEPSPTNIKRFKKGMWKKTMPKGLKMKKLIERPDGTLVHDTSYVGEDAWEDDQEAPEERVKQIIEDDERLNKEEKKELTKGLGISGEVQTKGTWRERLLKWREILRKERFVEQLDSLNAKYVVEFDMKEVENSLRKDVAENVTDTQGTRALWIAKRWWRYRPKLPYTYFLNKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEFVVDIPLDPYLFEIITSSGVEVDLLQKRQIHYFMKVVIALVPGVLILWLIRESVMLLHITSKRFLYKKYNQLFDMAHAENFIMPVGDVGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQFYERDVQFVRGILLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKTGVDRLSLRQAIIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFGVHSSGRQLAEDVNFEELVFRTVGFSGADIRNLVNEAAIMSVRKGHSKIFQQDIIDVLDKQLLEGMGVLLTEEEQQKCEQRVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMVDQGYTTFGYMMMQMVVAHGGQCAERIVFGDDITDGGRDDLEKITKIAREMVISPQNKKLGLIALTKRVGLVDRPDSPDGELIRYRWDDPQVIPANMTLEVSELFTRELTRYIEETEELAMNALRNNRHILDLITSELLERSRITGLEVEEKLKELSPVMFEDFVKPFQINPDEEGPLRHNDRLRYQLPDLYPAPLHRC 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0500 981 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 33 981 - -
Ssu2g0500 981 Gene3D - 329 405 - -
Ssu2g0500 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 709 IPR027417 -
Ssu2g0500 981 Gene3D - 459 640 IPR027417 -
Ssu2g0500 981 Pfam AAA+ lid domain 661 702 IPR041569 -
Ssu2g0500 981 Pfam Peptidase family M41 731 932 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu2g0500 981 CDD AAA 500 639 - -
Ssu2g0500 981 Pfam ATPase family associated with various cellular activities (AAA) 502 638 IPR003959 GO:0005524|GO:0016887
Ssu2g0500 981 SMART AAA_5 498 641 IPR003593 -
Ssu2g0500 981 PANTHER ATP-DEPENDENT PROTEASE 33 981 - -
Ssu2g0500 981 Gene3D Peptidase M41 724 939 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu2g0500 981 Gene3D - 641 714 - -
Ssu2g0500 981 SUPERFAMILY FtsH protease domain-like 733 945 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0500 Ssu-Chr2 28767639 28827703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0500 465 859 Miscellaneous Gene Families AT5G53170 31.990 7.61e-55 203