Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0495 ATGCCTGAAGTTGAACCAATGGATTGTGCAGCTGCAAGAAAGACACAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGGGTAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACAATACAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTCAAAGATGAATATGCTACACTGAATGAAGAATCTCGTGAGttGACTCAGGAGAAAAATGATCTCAGGGAGGAGAAGGCTTCTCTTAAATCAGATATTGAGAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACAATGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCATATCCAGTGCCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAACCATTCCCCTTCTTTGCTAATCAACATCCTGCAGTCATCTCTAACCCCTGTTCAACTTTCGTTCCTTATTTAGCCCCCAATACCCTTGTTGAACAACAATCCACCCAGTACGTATCCCCTCCACTTCATCCAGGTGGTCGGTCCAATGTGCCAGGAAAACAAGAGTCCAGAAGCAAATCATCCAGGGAGAGCAAGGCTGAAAAGAATGTGGATTCTAATGATGTCACTACGGACCTCGAGTTGAAGACTCCTGGATCTTCTGCAGATCAGGATTTATCATCTGGACAAAGAAAATCCAGCAAGTTGTCAAGGAAGGAAAGCAGCTGCACAGAAGGGAGTTCATTAGGTAGGTGCTCTTCTTCTCGTAGCGTTCAGGATAGCTCATCAAGCAGTGTAGTGGCAAGCAGAAAGGATAATGAATGA 867 0.4383 MPEVEPMDCAAARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILGDTIQLLKDLTSQVSKLKDEYATLNEESRELTQEKNDLREEKASLKSDIENLNNQYQQQLRTMFPWTAMDHSVMMAPPSYPYPVPMAVPPGPIPMQPFPFFANQHPAVISNPCSTFVPYLAPNTLVEQQSTQYVSPPLHPGGRSNVPGKQESRSKSSRESKAEKNVDSNDVTTDLELKTPGSSADQDLSSGQRKSSKLSRKESSCTEGSSLGRCSSSRSVQDSSSSSVVASRKDNE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0495 288 MobiDBLite consensus disorder prediction 10 25 - -
Ssu2g0495 288 MobiDBLite consensus disorder prediction 254 288 - -
Ssu2g0495 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 82 IPR036638 GO:0046983
Ssu2g0495 288 MobiDBLite consensus disorder prediction 1 25 - -
Ssu2g0495 288 PANTHER TRANSCRIPTION FACTOR BHLH121 2 286 IPR044579 GO:0003700|GO:0055072
Ssu2g0495 288 CDD bHLH_AtILR3_like 17 91 - -
Ssu2g0495 288 Coils Coil 52 114 - -
Ssu2g0495 288 SMART finulus 18 68 IPR011598 GO:0046983
Ssu2g0495 288 PANTHER TRANSCRIPTION FACTOR BHLH121 2 286 - -
Ssu2g0495 288 Gene3D - 10 90 IPR036638 GO:0046983
Ssu2g0495 288 Coils Coil 11 31 - -
Ssu2g0495 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 62 IPR011598 GO:0046983
Ssu2g0495 288 MobiDBLite consensus disorder prediction 204 223 - -
Ssu2g0495 288 MobiDBLite consensus disorder prediction 182 288 - -
Ssu2g0495 288 MobiDBLite consensus disorder prediction 224 245 - -
Ssu2g0495 288 Pfam Helix-loop-helix DNA-binding domain 13 62 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0495 Ssu-Chr2 28589183 28592676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0495 3 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 63.281 1.38e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g0495 HLH 4.1e-09 No_clan