Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0472 ATGGTTTCTCTCACGGGAAAATCTAGAGTGGGTTCATCTCGAGCCTCTGTCGGTGGTGCCCAATCTCTTCCAAGCGTGGGTGGTAGAAATTTCAAGGTGTTTTCGGAAATTGACCGGACTAAAGTTGGTGATGGGAATATgACATCGGCAAGAGGAACAGGTACAACTTCAAGGAGTGCTGTGGTAGCTAACAAAGGGGTTATTCTGAATAGCACCAGTAATCCAAAGGGtggtctcaaaataaaaatggatcAAAGTATTGGCAAATATGGTACTTCTGTAGCAAATACAAATGCGAGAAAGGCATTGGCTGATGTTAGCAATGTTCAAGAAAACTTCACAACAGCTGTTGGGCATGCTAGCTTAAAAATGAAGGTTTCAGCAGGTTCAAGCACCAAAATAGTGGGCATATCTTTGAGGAAATCCTTCATGGGAAGAGTGCAAAGAAATACAAGTAAAGGTGATGTTCAATTAGACGCTCTCAATAGAGATGATCAGAAGAATAATACAAATGGAGGCCAATCAGTTGTTGCAACAAAGGACAGgtTTACAAGGAAGCCTATATTACCTACAACTACaagCGCTTCAAGGAAGTCTTTACCAGTACCAAGGAGGGTAAGCAGGGAAGATACCAGTAGCACAAAGGAAAGTGTTAGAAGTTCTCAAACAGCAAAAGGCCAAAGTGCTCTCCCCACTAAGGCAACAGCAAACACAAGAGCTAGTTCCCAACTAATTAATGCAAGAAGCCATCTATGGAAGAATCGAGTGAGTGATGGTTTTGTTCAAATGGTTCAACCTAATGTTTTACATGCATCCTCAAGGAAGTCCACCAAGCCTATTGTTAAGACCGCACTCAAGGCTTCCACTGCTCAAAGGACTATAAAATCTAAATCCATATCAGGTCAGAAAAAATTAGAATCAACTGCTGCAACATCATCTCAGGCCAAGGAAGCAGTTCCTTTGTCTTTTCCTGAGAATGGTTCGGTGACAGTTTCTGATGATGCAAATCAAAGTAATCAAAGTCATCTTCCATCTGGAGAGAGCAATCTGATAACAGATTTGTCAGAGCTTATTCCAAGGAAAAAATCCAGCCGCAGGAAATCTTATACATCTTCATTAATTGAAAACTCTAAGTTTCTCAAGGAAAGCGGTGAAGATAGAGAGCAGGATAACCTACCAAATATAGATAATGAATGTAATCAACTTGAAGTTTCTGAATACATTGATGATATATATCAGTATTACTGGGTTACTGAGGCACATAATCCAGTTTTAGCAAATTACATGTCAATTCAGACTGACATAACACCTCATTTGCGGGGCATTTTGATCAACTGGCTGATTGAAGTAAACAAAGAATTTCCATCATCTTTCAGATGGCTTTTCTTTCATCATGTACacttcaaatttgatttgatgcCGGAAACACTGTATCTCACTGTTACATTGTTGGATCAATATCTTTCCCTAGTGACTATCAAAAAGACTGATATGCAGTTAGTTGGTCTTACAGCACTTTTGCTGGCTTCAAAGTATGAGGATTTTTGGCATCCTAGGGTCAAAGACTTAATTAGCATCTCAGCTGAGTCATATACTAGAGATCAAATGCTTGGAATGGAAAAACTCATTCTTAGAAAATTAAAGTTCCGTCTAAATTCTCCTACTCCTTATGTTTTTATGGTGAGGTTTCTCAAGGCTGCACAATCAGATAAAAAGCTTGAGCACATGGCATTCTTTCTGGTTGACCTATGCTTAGTTGAATATGAAGCTTTAGCATTCAAGCCTTCATTACTTTGTGCATCAGCTCTCTATGTTGCACGTTGTACCTTGCAAATAACTCCACCATGGACCCCATTACTTCACAAGCATGCGCGTTATGAAGTTTCACAGATCagGGATTGTGCGGATATTATATTGAAGTTCCACAAAGCTGCTGGGGTTGGAAAATTGAAGGTGACATATGAAAAATACTCTACACAGAAACTCAGTAGGGTTGCAGCAGTGAAACCGTTGGATAGACTTCCCCTGTGA 2031 0.39 MVSLTGKSRVGSSRASVGGAQSLPSVGGRNFKVFSEIDRTKVGDGNMTSARGTGTTSRSAVVANKGVILNSTSNPKGGLKIKMDQSIGKYGTSVANTNARKALADVSNVQENFTTAVGHASLKMKVSAGSSTKIVGISLRKSFMGRVQRNTSKGDVQLDALNRDDQKNNTNGGQSVVATKDRFTRKPILPTTTSASRKSLPVPRRVSREDTSSTKESVRSSQTAKGQSALPTKATANTRASSQLINARSHLWKNRVSDGFVQMVQPNVLHASSRKSTKPIVKTALKASTAQRTIKSKSISGQKKLESTAATSSQAKEAVPLSFPENGSVTVSDDANQSNQSHLPSGESNLITDLSELIPRKKSSRRKSYTSSLIENSKFLKESGEDREQDNLPNIDNECNQLEVSEYIDDIYQYYWVTEAHNPVLANYMSIQTDITPHLRGILINWLIEVNKEFPSSFRWLFFHHVHFKFDLMPETLYLTVTLLDQYLSLVTIKKTDMQLVGLTALLLASKYEDFWHPRVKDLISISAESYTRDQMLGMEKLILRKLKFRLNSPTPYVFMVRFLKAAQSDKKLEHMAFFLVDLCLVEYEALAFKPSLLCASALYVARCTLQITPPWTPLLHKHARYEVSQIRDCADIILKFHKAAGVGKLKVTYEKYSTQKLSRVAAVKPLDRLPL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0472 676 PANTHER CYCLINS 127 673 IPR039361 -
Ssu2g0472 676 SUPERFAMILY Cyclin-like 400 552 IPR036915 -
Ssu2g0472 676 MobiDBLite consensus disorder prediction 1 20 - -
Ssu2g0472 676 MobiDBLite consensus disorder prediction 186 200 - -
Ssu2g0472 676 PANTHER CYCLIN-B3-1-RELATED 127 673 - -
Ssu2g0472 676 MobiDBLite consensus disorder prediction 148 238 - -
Ssu2g0472 676 MobiDBLite consensus disorder prediction 216 238 - -
Ssu2g0472 676 Gene3D - 547 674 - -
Ssu2g0472 676 SMART cyclin_7 461 545 IPR013763 -
Ssu2g0472 676 SMART cyclin_7 558 640 IPR013763 -
Ssu2g0472 676 Gene3D - 425 546 - -
Ssu2g0472 676 CDD CYCLIN 455 544 IPR013763 -
Ssu2g0472 676 Pfam Cyclin, N-terminal domain 410 454 IPR006671 -
Ssu2g0472 676 Pfam Cyclin, N-terminal domain 462 552 IPR006671 -
Ssu2g0472 676 Pfam Cyclin, C-terminal domain 554 669 IPR004367 -
Ssu2g0472 676 MobiDBLite consensus disorder prediction 1 22 - -
Ssu2g0472 676 MobiDBLite consensus disorder prediction 148 178 - -
Ssu2g0472 676 CDD CYCLIN 554 639 IPR013763 -
Ssu2g0472 676 SUPERFAMILY Cyclin-like 554 673 IPR036915 -
Ssu2g0472 676 MobiDBLite consensus disorder prediction 295 350 - -
Ssu2g0472 676 SMART Cyclin_C_2 554 671 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0472 Ssu-Chr2 27173829 27186567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0472 26 676 Core Cell Cycle Gene Families AT1G16330 45.562 9.69e-172 504