Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0469 ATGGAAAGAATGTTCCCTCCTAAGAAGCCTTCAACTATGAATTCCCATGACAGACCCATGTGCGTCCAAGGGGACTCGGGGCTTGTCCTCACCACAGACCCAAAGCCACGCCTCCGTTGGACTGTTGAACTACATGAACGCTTCGTTGATGCTGTTGCTCAGCTTGGAGGACCTGATAAGGCCACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTCACACTTTACCACCTCAAGAGCCACCTTCAGAAATTCAGGCTTGGAAAGCAGCCCCACAAGGATTTCAATGAGCACTCGATTAAGGATGGCATGAGAGCTTCGGCTATAGAACTTCAACGAAATATTGGCTCATCTTCTGCCATGATTGGCCGCAACATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTTCAAAAAAACCTTCAGCTGAGGATTGAGGCTCAAGGGAAATACATGCAGAGTATATTGGAGAAGGCTTATCACACACTTGCAGGGGAAAACATGGCCACAGACATGAAGGGTATTGGAGGTCCTCAAGGCACTCCTGATATGGGGGTCATGAAAGAATGTGGTTCTcttaatttcctttcttttcaagATCTTAACATTTATGGTAGTGATGACCAACTTGATGGGTTTATGCCAACCAATAATGAAAGTTTGTTTATGGGGAAGAAGAGGCCTTGCCCCTATAGTGGTAGTGGAAAGAGTCCACTGATTTGGAATGATGATCTCAGGCTTCAAGACTTGGGAACGGCTTCATCATGCATTAGCCCTCAAGATGACCCTTTCAAAGGTGATCACAAGGTTCACATTTCACCACCATCAATGGATAGTGATCCCATGTCGGAGATCTATGACGCAAAGCCAGTGGTACGCCCCGTACAAAGTGTAGGTGATCAGAAGAAATTTGATGCATCTATGAAGCTAGAAAGGCCATCGCCAAAAAGATCACCACTTCAACCAGAAAGGACCAGTCCTATGATCAATGCTAGTTCCGTGGCACAAGGTAGAAGCTCACCATTTGGTtga 1056 0.4517 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNEHSIKDGMRASAIELQRNIGSSSAMIGRNMNEMQMEVQRRLHEQLEVQKNLQLRIEAQGKYMQSILEKAYHTLAGENMATDMKGIGGPQGTPDMGVMKECGSLNFLSFQDLNIYGSDDQLDGFMPTNNESLFMGKKRPCPYSGSGKSPLIWNDDLRLQDLGTASSCISPQDDPFKGDHKVHISPPSMDSDPMSEIYDAKPVVRPVQSVGDQKKFDASMKLERPSPKRSPLQPERTSPMINASSVAQGRSSPFG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0469 351 MobiDBLite consensus disorder prediction 261 287 - -
Ssu2g0469 351 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Ssu2g0469 351 MobiDBLite consensus disorder prediction 1 20 - -
Ssu2g0469 351 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Ssu2g0469 351 MobiDBLite consensus disorder prediction 327 351 - -
Ssu2g0469 351 MobiDBLite consensus disorder prediction 312 326 - -
Ssu2g0469 351 Gene3D - 34 92 - -
Ssu2g0469 351 Pfam MYB-CC type transfactor, LHEQLE motif 131 169 IPR025756 -
Ssu2g0469 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Ssu2g0469 351 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 299 - -
Ssu2g0469 351 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Ssu2g0469 351 MobiDBLite consensus disorder prediction 302 351 - -
Ssu2g0469 351 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 299 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0469 Ssu-Chr2 27044666 27047255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0469 4 351 G2-like Transcription Factor Family AT1G79430 56.992 2.29e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu2g0469 Myb_DNA-binding 4.7e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1495 8 30279473 30281505 Ssu2g0469 2 27044666 27047255 PCT