Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0466 atgATGATATTACCCTTGCTAGGGTTGTTTTTCTGGCTAGAAAACAAGGTATCGAATTCCAGTGAGGTTAATCATTACTCCAAATGGAAGGAACTGGTGCAGATCAGTGATGAAATAAACAGCCTATTCTATGAACAAGATGAGGAGAACACTAGTGCACACTGTGCTTGCTCCTTCTGTGGCAGATTAAGCGGCATAGTCACAAGATGCTCACGCTGCAAAACTGCTATATATTGCTCAAATGTATGCCATGTTATGCACTGGAGGTTTTGGCACAAATACGAATGCGTTGAGATAGAAGGGTCAGAAGATCAGCAGCAATCACCTTCTCATGGAACCCATTACCTTCTCGTGGACCCTGAAAACGAGAAGCACTCATTCAAAGAAGTTGAGCAAAGAAGATATGAGGGAGATGTTTACTATATTGAAGGAGGAGAAAGCAGTGTTGTTGAGTTCAGTAATGAAACAGCAATGCCTCAACATGGCGTTGTGAATGGCAACCATGGCTGTGCAGTGTGTGGTCATCCAAGCTCTAAAGTATGCTCAAGGTGCAAAGctataaaatattgCTCACGGACATGCCAACATTTCGATTGGAGATCAGGCCATAAGTTTAAATGTCTTGTTGAGAAGGCAAATTCAAATCAAGCAGCTACGGTCAATCAAGAAGAACCTGCTCATGgaaatGTTGTGTGTCCCACGAATTCGTATGAGGTGGAAGAGAATGCCCATTCATCTAGTCCTTTTAGCCTGGAATTTTACTCAGGTCTCGAACATTTTACCTTATATGTTCATATTTTGGAAGCAACCAATAATGCCCAGAAGGAGGTTGAAGAACAATTGAGTAGCCTCAAAGAAGAATTGGCAAAGATTATAGACGAGAACATATCACTACGATCAGAGCGCGACGAATGGGAAGCGCGAGCAAGGAATTCTATCGATATACTTTACAGCTTCAGCAAAGAAAATGAACACCAGCTGTTTATTTTGAAGCATGAAAATGAATTGATGTCAAATGCTGAGAAGCAAGCTCGTCAAATGGTTAATAGTTTATCTCAGAGGTTACACTACTTGCAGATGGCAGTGGATAATGGAGTTGAAGAGAGGCACAAACAAGAGGAATATATACAAAAGCTGCAgAATGAATGTGCTAAGGCTAAGATAGAGCTACAAGAACAGAACAAGTGCGTCAAAAGGCTTACACTGGAGCTTGATAAGACCATTGGATTTTCTGTGAGAATAACTGAAGAGAAAAGACAAAAGTTAGTCAATGCCTTTAGTGAAAAAGCAGCTGTTGAATCCAATGCTGTTGATGCTGAGCTGTCCCAGCCAATTAGTTTGAGCAGAAATCCAACTTTTACTAGACAGGCTTGTTCAATTTGCCTAACCAATGAGAAGAACATGACCTTTGGTTGTGGACACATGACTTGTACAGAGTGTGGAACGAAAATTCGCAAGTGTCATATATGCCGAAAGAAGATCACCATTCGTATCAAGTTGTTTCCTGATTGA 1512 0.4061 MMILPLLGLFFWLENKVSNSSEVNHYSKWKELVQISDEINSLFYEQDEENTSAHCACSFCGRLSGIVTRCSRCKTAIYCSNVCHVMHWRFWHKYECVEIEGSEDQQQSPSHGTHYLLVDPENEKHSFKEVEQRRYEGDVYYIEGGESSVVEFSNETAMPQHGVVNGNHGCAVCGHPSSKVCSRCKAIKYCSRTCQHFDWRSGHKFKCLVEKANSNQAATVNQEEPAHGNVVCPTNSYEVEENAHSSSPFSLEFYSGLEHFTLYVHILEATNNAQKEVEEQLSSLKEELAKIIDENISLRSERDEWEARARNSIDILYSFSKENEHQLFILKHENELMSNAEKQARQMVNSLSQRLHYLQMAVDNGVEERHKQEEYIQKLQNECAKAKIELQEQNKCVKRLTLELDKTIGFSVRITEEKRQKLVNAFSEKAAVESNAVDAELSQPISLSRNPTFTRQACSICLTNEKNMTFGCGHMTCTECGTKIRKCHICRKKITIRIKLFPD 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0466 503 ProSiteProfiles Zinc finger MYND-type profile. 170 207 IPR002893 -
Ssu2g0466 503 Gene3D - 158 213 - -
Ssu2g0466 503 Gene3D - 41 100 - -
Ssu2g0466 503 ProSiteProfiles Zinc finger RING-type profile. 458 491 IPR001841 -
Ssu2g0466 503 Coils Coil 369 396 - -
Ssu2g0466 503 SUPERFAMILY HIT/MYND zinc finger-like 167 209 - -
Ssu2g0466 503 SUPERFAMILY RING/U-box 457 498 - -
Ssu2g0466 503 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 22 107 - -
Ssu2g0466 503 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 168 433 - -
Ssu2g0466 503 Coils Coil 330 350 - -
Ssu2g0466 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 501 IPR013083 -
Ssu2g0466 503 ProSiteProfiles Zinc finger MYND-type profile. 57 96 IPR002893 -
Ssu2g0466 503 SUPERFAMILY HIT/MYND zinc finger-like 54 98 - -
Ssu2g0466 503 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 168 433 - -
Ssu2g0466 503 Coils Coil 267 308 - -
Ssu2g0466 503 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 22 107 - -
Ssu2g0466 503 Pfam MYND finger 57 96 IPR002893 -
Ssu2g0466 503 Pfam MYND finger 170 207 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0466 Ssu-Chr2 26909021 26918571 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0466 170 207 Miscellaneous Gene Families AT4G31670 57.895 1.04e-08 55.8