Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0463 ATGCCTGTTTATGGGGCATCATCATCATTGAACCTAACTAGGCTTATTGGGTTGCTTGGTTTGGGAGAAAAGGAAGCACCCATTTCTGATCACACCAACACTTTGCTTCAGTTCATATTGTTGCTAGCAATAGTAATTGGAATCGGGTGGCTATTGAATCGGCTGGCAGAGGACGGAGAAAGCTATCCCAATGCCAATGAGGTTGATGAGCTGGGGGAAATGGATCACATCAGTGATGAATTAGACTATTTTTTTGAGTCCCAGCAGGGGGGGCAGGAGCACCCTAATGGTGAATTAGACCATTATTTTGATGGGGGTGATCATCCCCGGGCCGCGGCGGCCGGCGACGATGCTGGTGGGAGACACGGTGGTTGCGCCTTCTGTGGAAATTTTAGCACCACAAGGTGTTCTCGCTGCAAGGCTGCTAGATATTGCTCAATGAAATGCCAAATTGAACATTGGAGGTCAGGGCATAAACATGAATGTTCTGAATCGGAGCCTGCAGCAGATGACGCAAGACCAACTCATGATCACGGACCCTCCAAGCTTGTCGAGAAGTCTGAAATGGAGAGTACCTCTAATGGGTCCCATGGTGATGATGGAGTGAAGAGGAGTTCAGAATCAGATGTGGGGGTGGATATCTCCAGAGGCAATAATGTTAACAACTTCCATGGTTGTGAAGTATGTGGTAGCCCAAGTACCACAAGATGTTCAAGATGCAAAGCCGTCAAATACTGcTCAGTAAAGTGCTTGATTATGGACTGGAAATGGCATAAAGATCACTGCATTGCAAGGGACGTGAATTCAGCTTCAATAGAAAGACCCCATAGAGATGTAAATTTACTCCCTGAAGCCAACATGAAGGTTGGAGTGCTCAAGAATTCAAATCAAGAGGAAGAGAATATTCATTCATCTGGTCCCCTTTCTTTGGAGTTTCATCCGGAAGGAACCGCAAGTTTCCAGTCTCCAATTGAAGTATCACAGGATCCTACCAAGGAAGCACACGTGCATGGAATCGAATGGGTGAGATACCTTGAGGCCGAAGTAGCAAAGTctagGAATGAGATTTTATTACTTCAGTCAGAACGTGATGAATGGAGGAATCTAGCAAATTTTGCTAGAGAAAAATTTCAAAGCCTCAAGAAGGAATCTAACTACCAGTTGTCTGCGTTGAAGAATGAAAAGGAATCAAAATCAGATGCTGAAAAGAAAGCTTGCAATGTGATTCATAGTTTACATGAAAGGCTAAACCACTTGCAGAATGCAGTGCAAGAAAGCATTACAGAGAAGAGAAAGCTAGAAGAACATGTACAAATTTTAGAGAGTGAATGTGCTGAGCTGAAGAAAGAACTGCAAGAAGAGCATAAACGCGGTCAACGTCTTACAGCGGAATATGACAAGAGTCATGAGGCTGCACAAATAGCCAGGAGAAAATTTGAAGCAGTAAGACAAGAGTTACAAGAAGAGCGAGAACATACCCAACTACTTAAGGAGAATTTTCGTAGAGATGTTATATTTGCTGAATCTAGAGCTGCCTTTGCTGAGGCAAAACTCAGTGATCTTTATAGGAAAATCAGAATGTCAGATTATAAGATCTGTTCTATATGCGTGAACAATGAAATAGACTTGGCCTTTGGATGTGGGCACATGACTTGTAGGGACTGCGGatcaaaattatcaaagtgTCCTATATGCCGTGAGCAGATCACAAACCATATTAGGCTGTTTCCTggttga 1737 0.4295 MPVYGASSSLNLTRLIGLLGLGEKEAPISDHTNTLLQFILLLAIVIGIGWLLNRLAEDGESYPNANEVDELGEMDHISDELDYFFESQQGGQEHPNGELDHYFDGGDHPRAAAAGDDAGGRHGGCAFCGNFSTTRCSRCKAARYCSMKCQIEHWRSGHKHECSESEPAADDARPTHDHGPSKLVEKSEMESTSNGSHGDDGVKRSSESDVGVDISRGNNVNNFHGCEVCGSPSTTRCSRCKAVKYCSVKCLIMDWKWHKDHCIARDVNSASIERPHRDVNLLPEANMKVGVLKNSNQEEENIHSSGPLSLEFHPEGTASFQSPIEVSQDPTKEAHVHGIEWVRYLEAEVAKSRNEILLLQSERDEWRNLANFAREKFQSLKKESNYQLSALKNEKESKSDAEKKACNVIHSLHERLNHLQNAVQESITEKRKLEEHVQILESECAELKKELQEEHKRGQRLTAEYDKSHEAAQIARRKFEAVRQELQEEREHTQLLKENFRRDVIFAESRAAFAEAKLSDLYRKIRMSDYKICSICVNNEIDLAFGCGHMTCRDCGSKLSKCPICREQITNHIRLFPG 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0463 578 MobiDBLite consensus disorder prediction 161 185 - -
Ssu2g0463 578 MobiDBLite consensus disorder prediction 88 116 - -
Ssu2g0463 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 519 577 IPR013083 -
Ssu2g0463 578 ProSiteProfiles Zinc finger RING-type profile. 533 566 IPR001841 -
Ssu2g0463 578 Coils Coil 416 464 - -
Ssu2g0463 578 MobiDBLite consensus disorder prediction 161 215 - -
Ssu2g0463 578 PANTHER COPINE FAMILY PROTEIN 1 117 576 - -
Ssu2g0463 578 PANTHER PROTEIN, PUTATIVE-RELATED 117 576 - -
Ssu2g0463 578 ProSiteProfiles Zinc finger MYND-type profile. 125 162 IPR002893 -
Ssu2g0463 578 SUPERFAMILY HIT/MYND zinc finger-like 122 163 - -
Ssu2g0463 578 Gene3D - 115 167 - -
Ssu2g0463 578 Pfam MYND finger 125 162 IPR002893 -
Ssu2g0463 578 Pfam MYND finger 226 262 IPR002893 -
Ssu2g0463 578 MobiDBLite consensus disorder prediction 97 115 - -
Ssu2g0463 578 Gene3D - 215 267 - -
Ssu2g0463 578 SUPERFAMILY RING/U-box 522 572 - -
Ssu2g0463 578 Coils Coil 469 503 - -
Ssu2g0463 578 ProSiteProfiles Zinc finger MYND-type profile. 226 262 IPR002893 -
Ssu2g0463 578 SUPERFAMILY HIT/MYND zinc finger-like 223 263 - -
Ssu2g0463 578 Coils Coil 342 383 - -
Ssu2g0463 578 Pfam Prokaryotic RING finger family 4 533 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0463 Ssu-Chr2 26796604 26810101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0463 102 162 Miscellaneous Gene Families AT4G31670 50.769 4.13e-11 63.9