Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu2g0461 | ATGTCACAATCATCCGCGCCTCCGCCTCCACCTCCTCCGCCGTCGCTGGCGCCACCGCCGCCGACGACTCCGCCGCCGCCTCAGCCGGCCGAGAGCGTCCGCGTGCGCTGCGCCGGCTGCCGCATGATCCTGACCGTGGCGCCCGGCCTGACCGAGTTTGCGTGCCCTACCTGCCGAATGCCGCAGATGCTTCCGCCGGAGCTCATGCCTAGGGCGGCCAAGGCGCCGCAGCCTCCGACGTCCTCTCCGGCGTCGCAGCCGGCGCACGGCATTGATCCCACTAAGATCCAGCTTCCCTGCGCTTCGTGCAAGGCCATCCTCAACGTCCCTCACGGCCTCGCGCGCTTCGCTTGCCCTCAGTGCGGCGTTGACCTCGCCGTCGATGTCTCCAAGGTCAAGCAGTTCTTCCCCACtgcgccgccgccgccgccgcccgAAGAAGTTAACGAGGTTGCTGTTGAAGTGGAGCGGGACGAAGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGACCGCCAAAAGTATCTATTGGACCGCCACACCCAGATCCTGTTGTAGAGACATCTTCCTTGTCTGCAGTGCAGCCTCCTGAGCCAACTTATGATCCAAAAATTAAAGATGATTTGGAAAGTTCAAAGGCTTTGTCTTGCTTGCAAATTGAGACTTTGGTCTATGCTTGTCAGAGACACCTTCAACACCTCCCAAATGGAGCTAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACAATTGCAGGGCTAATTTGGGAGAACTGGCATCACGGAAGGAGGAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGATGTGGGTGCAACATGCATTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGGTCAGGGAGGGAGTTGTTTTCTCTACGTACAATAGTCTCATAGCATCTTCTGAGAAAGGTCGTTCTCGTCTCCAGCAGCTTGTACAGTGGTGTGGACCAGGGTTTGATGGTCTTATAGTTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAATCTGGTAGTCAGCCAACACGAACTGGAGAAGCAGTGCTTGATATCCAGGATCGACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCGACTGGAGCATCTGAACCTCGCAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGTTGGGACTTCATTCTCTGATTTCCGTGAATTTCTAgGTGCTCTTGACAGAGGGGGTGTTGGAGCTCTTGAATTAGTTGCCATGGACATGAAAGCAagGGGCATGTATTTATGTCGGACACTTAGTTATGAGGGTGCAGAGTTTGAAGTTATCGAAGCACcattagaagataaaatgatGGAAATGTATAAAAAGGCAGCAGAATTTTGGGCTGAATTACGAGTAGAATTGCTCTCAGCCAGTGCCTTCCTAAATGATAAACCTAATTCTAGTCAACTATGGCGATTATACTGGGCAAGCCACCAGCGTTTCTTTAGACACATGTGTATGTCTGCTAAAGTCCCTGCTACTGTGAGACTAGCGAAGCAAGCattagttgaagaaaaatgtgtAGTCATTGGTCTTCAGAGTACTGGAGAAGCAAGGACAGAGGAAGCTGTGACAAAAtatgGTTCTGAACTTGATGACTTTGTTTCCGGACCTCGAGAATTGCTGCTTAAGTTTGTGGAAGAAAATTACCCATTACCCGAAAAACCTGAACTTCTCCCAGGAGAGGATGGGGTAAAAGAACTCCAAAGGAAGAGGCACTCTGCAACTCCTGGTGTTTCAGTAAAAGGAAGGGTCAGAAAAGTAGCCAAGTGGCAACCTCCTAGTGATGCTGAAAGTGATGAAGAATCTGAAACTGACTCTGCCGTTGAATCTACTGACTCTGATGATGAGTTTCAAATATGTGAAATTTGCACTACTGAGGAGgaaaggaaaaaattgcTACAGTGTTCCTGCTGTGGTAAATTAGTCCATTCCACTTGCTTGATGCCACCAATTGGTGACATAGTTCCTGAAGAGTGGTCATGCCATTTGTGTAAGGAAAAAACAGATGAATATCTTCAAGCAAGACAGGCCTACATAGCTGAACTTCAGAAGAGGTATGACGCAGCCTTGGAACGCAAGACAAAAATATTAGAGATAATTCGTTCTTTGGATCTTCCAAATAATCCTTTGGATGATATTGTTGACCAGCTAGGAGGCCCTGACAAAGTTGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGGGCCGCTACTGGAAAGGGTGTAACTTATCAGGCTCGTAATACAAAAGACGTCACTATGGAAATGGTTAACATGCATGAAAAGCAGCTCTTTATGGATGCTGGATCAGCTGGCGTTTCTTTGCAGTCAGATAGAAGAGCTGCAAATCAGAAAAGAAGGGTtcatttaactctagaacttccaTGGAGTGCTGATCGGGCAATTCAGCAGTTTGGAAGAACTCATAGATCAAATCAAGCTTCAGCACCAGAATACAGGATACTCTTTACAAATCTTGGTGGAGAACGAAGATTTGCATCAATTGTTGCCAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGTGACCGCAGGGCTGGACCTACATTAAGTGCTTATAATTATGATAGTGCCTATGGAAAGAGGGCTCTGATGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTGCCTGTTGTTCCTCCGGGATGTTCATCTGACAAACCAGAGGCAATTCAAGATTTTATTGTGCAGGCAAAAGCTGCTCTTGTATCTGTTGGAATAGTGAGGGACACAGTTCTTGGTAATGGTAAAGATCTTGGAAGGTTATCCGGTCGTATTATTGATTCAGATATGCACGAAGTTGGACGGTTCCTTAACCGGATTTTGGGACTACCTCCTGATATTCAGAATGGGCTATTTGAGTTATTTGTGAGTATCTTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGTAACCTTGACACGGGCATTGTTGACTTGAAAGCTAATGTAATTGAACTACAAGGGACTCCAAAGACCGTTCATATTGATCAATTGACTGGGGCTTCAACAGTTCTGTTTACATTCATCTTAGATCGTGGGATCACATGGGAGTTAGCAAATACGATGCTGAATGAAAAGCAGAAGGATGGGCTTGGTTCTGCCAATGATGGCTTCTATGAGTCCAAGAGGGAGTGGTTGGGAAGACGTCATTTCATTTTAGCATTTGAAAGTTCTGCTTCGGGTATGTATAAAACAGTTCGCCCCCCTGTTGGAGAATCAAACCGGGAGATGCCTCTGtctgaattaaaaagtaaatatagaaaaatttcaTCTTTAGAGAAGGCTCAGTCTGGTTGGGAAGAGGAATATGAAGTTTCATCTAAACAGTGCATGCATGGTCCCAATTGTAAGATTGGCAACTTTTGTACAGTTGGTAGAAGACTACAGGAAGTAAATGTCTTGGGTGGCCTCATCCTTCCTGTTTGGGGAGCTGTAGAAAAGGCTCTTTCTAAGCAGGCCCGCCTAAGCCATAGGAGGCTACGTGTGGTACGCATTGAAACTACTGTGGATACCCAACGtattgttgggcttcttgttcCTAATGCAGCAGTGGAAACTGTGCTTCaagGTTTAGCATGGGTTCAAGAAATTGATGATTGA | 3753 | 0.4482 | MSQSSAPPPPPPPPSLAPPPPTTPPPPQPAESVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMPRAAKAPQPPTSSPASQPAHGIDPTKIQLPCASCKAILNVPHGLARFACPQCGVDLAVDVSKVKQFFPTAPPPPPPEEVNEVAVEVERDEDEGGMVGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPEPTYDPKIKDDLESSKALSCLQIETLVYACQRHLQHLPNGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSKSVGVREGVVFSTYNSLIASSEKGRSRLQQLVQWCGPGFDGLIVFDECHKAKNLVPESGSQPTRTGEAVLDIQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGVGTSFSDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMEMYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKQALVEEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWQPPSDAESDEESETDSAVESTDSDDEFQICEICTTEEERKKLLQCSCCGKLVHSTCLMPPIGDIVPEEWSCHLCKEKTDEYLQARQAYIAELQKRYDAALERKTKILEIIRSLDLPNNPLDDIVDQLGGPDKVAEMTGRRGMLVRAATGKGVTYQARNTKDVTMEMVNMHEKQLFMDAGSAGVSLQSDRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPTLSAYNYDSAYGKRALMIMYKGIMEQDSLPVVPPGCSSDKPEAIQDFIVQAKAALVSVGIVRDTVLGNGKDLGRLSGRIIDSDMHEVGRFLNRILGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDLKANVIELQGTPKTVHIDQLTGASTVLFTFILDRGITWELANTMLNEKQKDGLGSANDGFYESKREWLGRRHFILAFESSASGMYKTVRPPVGESNREMPLSELKSKYRKISSLEKAQSGWEEEYEVSSKQCMHGPNCKIGNFCTVGRRLQEVNVLGGLILPVWGAVEKALSKQARLSHRRLRVVRIETTVDTQRIVGLLVPNAAVETVLQGLAWVQEIDD | 1250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu2g0461 | 1250 | MobiDBLite | consensus disorder prediction | 639 | 655 | - | - | |
| Ssu2g0461 | 1250 | ProSiteProfiles | Zinc finger PHD-type profile. | 659 | 709 | IPR019787 | - | |
| Ssu2g0461 | 1250 | Gene3D | - | 212 | 412 | IPR027417 | - | |
| Ssu2g0461 | 1250 | MobiDBLite | consensus disorder prediction | 164 | 200 | - | - | |
| Ssu2g0461 | 1250 | ProSitePatterns | Zinc finger PHD-type signature. | 662 | 706 | IPR019786 | - | |
| Ssu2g0461 | 1250 | SUPERFAMILY | FYVE/PHD zinc finger | 652 | 712 | IPR011011 | - | |
| Ssu2g0461 | 1250 | PANTHER | OS08G0223700 PROTEIN | 30 | 1250 | - | - | |
| Ssu2g0461 | 1250 | MobiDBLite | consensus disorder prediction | 69 | 91 | - | - | |
| Ssu2g0461 | 1250 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 608 | 720 | IPR013083 | - | |
| Ssu2g0461 | 1250 | MobiDBLite | consensus disorder prediction | 626 | 655 | - | - | |
| Ssu2g0461 | 1250 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Ssu2g0461 | 1250 | Pfam | P-loop containing NTP hydrolase pore-1 | 182 | 482 | IPR039187 | - | |
| Ssu2g0461 | 1250 | SMART | PHD_3 | 661 | 707 | IPR001965 | - | |
| Ssu2g0461 | 1250 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Ssu2g0461 | 1250 | PANTHER | STRAWBERRY NOTCH-RELATED | 30 | 1250 | IPR026741 | GO:0006355 | |
| Ssu2g0461 | 1250 | Pfam | C-terminal domain on Strawberry notch homologue | 750 | 1029 | IPR026937 | - | |
| Ssu2g0461 | 1250 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 190 | 425 | IPR027417 | - |