Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0449 ATGACGATCGAACGAATTGTGGAGCAAAGTGCGTGTGGTTTCGTTGCTGCAGCTGCTACTGCTGAAGATATGGAGAGTTCGTACTTGAAGAGGCAGGAACAGAGGGAGGTCCACGTCGACGAGGGCAGAAGCAAAAGGAGCCCATGTTTGGGCAAACATGTTCTGCTGATTCCATCCACATCTGAATCAATTTGTACCATAGGGACTTCTGAGCACTTTAAAGTGGGTCGATTTCATGAAATTTATCACTCGAAGCTCTCACCCATTTCCCCAGTTCAACTAAAATCTATCCGCGTTGTAATgGTCAGTGACATAGGGGAGCACCTGGTGTTGCTAAGGTACCCAAGCCTTCAATCACTTCGCATGCACTTCAGAGACCAAAACTTTGGGAAGCCAGACGGGAAGAAGATCCCTGCACTCGACGAGAAGTACGTGATGGGGTTGGACTTCGCCGTGAAAGCGCTTTCCACGAGCATCCCAACCGAGGAATTTGCACAAAAAAGAAACTCTTGGAGCTTCTGGGTCTCTGATCCCTCTAAAGAAAACGCTCAAGACTATGAGAATCCAGCTCTCATTGATGCCGCAAGAAGCCTCATTTCCAAGCAGGGTTCATGCTGGTCTCAGCTCAAGTTCACAGGGATGATGCAGTGGGGAAATCGCCGGCAAGTTCGGTTCTTGGGCCGTCATGAGGAGCTAAAGGTTGAATCTTTGCCGGAACTGTCCAAGGGAAAAAGGGTCAGTGTTGAACTAAGAGAAGGGACTAgtgagaagaagaggaagaagggtGAAGAAGAAACCGAGGCTACCAAGGCAGGGTCTTTTGAGATTATGAGGGTGACTCGTCAATGTAcgaaaaatcatcaaaatgtGAGTAGTAGCTGTGGGgttcaaaaatctaaaaacgCAAAAAATAACCCCAAGAAGCAGCAGCTTGTGGcatacaacaaaaacaagcgAAAAATCTCAATTGACAGATGGTCTGCTGAGAGGTATAAGTTAGCAGAGGAGAACATGTTAAAggttatgaaagaaaaagaagctgTGTATGGAAACCCAATACTGAGGCCAAACTTGAGGTCAGAAGCACGAAAGTATATTGGTGACACGGGTCTGCTAGATCATTTGCTGAAGCACATGGCTGGAAAAGTGGCACCCGGAGGTTCTGAGAGATTCCGACGGCGACACAATGCTGAGGGTGCAATGGAATACTGGTTGGAGAGTGCTGATCTTGTTGATATTAGAAAGGAAGCAGGGGTTCAAGACCCTTACTGGACTCCTCCCCCCGGATGGAAGCTTGGGGACAGCATTTCACAAGATTACGTTACTGGTAGAGAACTCAGAGAGATCAAGGAAGAAATCCTCAAGTTGAAACAAGAAGTGCGGGAACTCGCAACAAAGAAGGGAGAGGAGGCATTGGCCATTGTGACTACTCCTAGCTCCTGTTTGTCTAGTTTGAATTCGGAGGACTATGGTCCGTTGGTTACTAAGCAGGAGATTTATGCAGAACTTGTGAGTAAGAAGGCTAAAATAGAGGAACAATTGAAGGAAATTTCACTGATCTTGAGTGGCATGGAGGAGCAACTGAAAATGCTGAAACCAACAATAGTTGAAGAGCCAATAATGTCAGTGGCAGAAAACATTGGAGGAGAGAcaaggaaggaaaagaaaagcaacAAGACCAAAGCACCAAAAGCAGCGGACACACAATTGCAGGAAAACAGCACAGCGGAGGACAAGGCAGCAAAGATAGAAAGGCTGAAAAGTGGTTTCAAAATTTGGAAGCCACAGGGGACCTTTGTATGGCCAAATATAGCTGTGTCTCCCCAAGTTGTGGCCAACCATGATGATCACACAGTGGTCCCAACCCCACCATCAGCTTCCTCTTCTACCACCTCAGCTCCAAAGCTCATCTCCAAATCCCAGGCTCAGCACCTGCCATTACAAATCCTAACTCATCCTTCTTCCCCTGTAAAGCCACTAGCAGAAAGGCGCCCTGTGAGCACTGCTACTTTGACTCATGTTACTGGACCATTCTCCCCTCGCATTTCTCCACTATTAGGGACCCCAAGATCCAAAATCACCACCACCGTCACTATTAACCTCAATGAGGCCCCTCTCACCCCCGAGTAG 2130 0.4498 MTIERIVEQSACGFVAAAATAEDMESSYLKRQEQREVHVDEGRSKRSPCLGKHVLLIPSTSESICTIGTSEHFKVGRFHEIYHSKLSPISPVQLKSIRVVMVSDIGEHLVLLRYPSLQSLRMHFRDQNFGKPDGKKIPALDEKYVMGLDFAVKALSTSIPTEEFAQKRNSWSFWVSDPSKENAQDYENPALIDAARSLISKQGSCWSQLKFTGMMQWGNRRQVRFLGRHEELKVESLPELSKGKRVSVELREGTSEKKRKKGEEETEATKAGSFEIMRVTRQCTKNHQNVSSSCGVQKSKNAKNNPKKQQLVAYNKNKRKISIDRWSAERYKLAEENMLKVMKEKEAVYGNPILRPNLRSEARKYIGDTGLLDHLLKHMAGKVAPGGSERFRRRHNAEGAMEYWLESADLVDIRKEAGVQDPYWTPPPGWKLGDSISQDYVTGRELREIKEEILKLKQEVRELATKKGEEALAIVTTPSSCLSSLNSEDYGPLVTKQEIYAELVSKKAKIEEQLKEISLILSGMEEQLKMLKPTIVEEPIMSVAENIGGETRKEKKSNKTKAPKAADTQLQENSTAEDKAAKIERLKSGFKIWKPQGTFVWPNIAVSPQVVANHDDHTVVPTPPSASSSTTSAPKLISKSQAQHLPLQILTHPSSPVKPLAERRPVSTATLTHVTGPFSPRISPLLGTPRSKITTTVTINLNEAPLTPE 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0449 709 MobiDBLite consensus disorder prediction 546 578 - -
Ssu2g0449 709 MobiDBLite consensus disorder prediction 548 562 - -
Ssu2g0449 709 Coils Coil 446 466 - -
Ssu2g0449 709 MobiDBLite consensus disorder prediction 287 307 - -
Ssu2g0449 709 MobiDBLite consensus disorder prediction 245 270 - -
Ssu2g0449 709 PANTHER PROTEIN DYAD 62 679 - -
Ssu2g0449 709 PANTHER PROTEIN DYAD 62 679 IPR044221 GO:0007131|GO:0051177|GO:0051321
Ssu2g0449 709 Coils Coil 507 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0449 Ssu-Chr2 26190793 26195247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0449 314 406 PHD Transcription Factor Family AT5G22260 39.000 6.06e-07 50.8