Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0446 ATGTCATTTTCCCGTGGCCAAAAATTTTTCAAGAGGTTCTGTGTGGATGAATTACAAATGGGAAGTCTTCCATATAGCAGCTTTTTGTCTAATGATCCCTTGCCATCCCTTGGAGCCAGAATCAACCAAGAAACAAGACTTAGAAGATACATAATTTCCCCTTTCGATCCACGTTATAGGGCATGGGAGATGTTACTAATTGTCCTAGTCGTTTACTCTGCATGGATATGCCCTTTTGAATTTGCCTTTCTGCCTTACAAGCAAGACACACTGTTCATCATAGACAACATTGCCAATGGCTTTTTTGCCATTGACATCATGCTCACATTCTTTGTGGCATATCTTGATAACCATTCTTACCTTCTTGTCGATGACCCCAAGAAAATTGCAATCAGGTACATATCTACCTGGTTTATCTTTGATGTCTGTTCAACTGCACCATTTCAATCCATCAGCCTCCTCTTCACTGATCACAGCAGTGAGATTGGCTTCAAAGTTCTCAACATGCTTCGGTTGTGGCGCCTGAGACGAGTCAGTTCTCTGTTTGCAAGACTTGAGAAGGACATTCGCTTCAATTACTTCTGGACTAGGTGCTCCAAGCTCATTGCTgTAACCTTGTTTGCGGTGCACTGTGCTGGATGCTTCAACTATCTGATTGCAGATAGGTACCCTGATGCCAAAAGGACATGGATTGGTTCTGTGTAcccaaatttcaaagaattaagTCTTTGTGAAAGATATGTCACTGCCATGTATTGGTCCATTGTCACACTTACTACCACTGGCTATGGGGATTTACATGCTGAAAACACAAGGGAGATGCTCTTTGACATCTTCTACATGTTGTTCAACTTGGGATTAACCTCATACATCATTGGAAACATGACAAACCTGGTAGTCCACTGGACAAGCCGCACCAGAAATTTTAGAGATACAGTCAGGGCAGCTTCAGAATTTGCATCAAGGAACCATCTGCCCCATCACATACAGGATCAAATGTTGTCACACTTGTGTTTGAAATTCAAGACAGAAGGACTGAAGCAGCAAGAAACACTAAATGGCATGCCAAAGGCAATTCGTGCAAGCATTGCATACCATCTATTTTTTCCTGTTGTGCAGAAGGTCTACCTCTTCCAAGGAGTCTCACATGACTTTCTTTTCCAACTGGTTACAGAGATGGAAGCTGAGTATTTCCCACCAAAGGAAGATGTTATACTACAAAATGAGTCTCCCACAGACCTTTACATGCTCGTTTCAGGGGCAGTGGATCTCATTCGCTATGATGTTGATGGCCATGAACAAGTTCTGAAGCAGGTTATTGCAGGAGAAACATTTGGGGAGATTGGAGTGTTATACTGTAGACCACAGCCTTTCACCGTTCGGACCACTGAGCTTTCTCAAATTTTAAGACTCAGCAGAACTTCCTTGATGAATACCTTACATGGGTATCCAGAAGCAGcacaaattataatgaaaaatatttttatgAAGTTAAAAGGGCATGAAGGATTGGATTTTGAATATCCACCTAGGGACCCTGGATTGGCTGTTTACCAGATGCATGATCGGGGCAACAAAGGAGGAAGCTTTTCTGATGCATGTACAAATAATTCACATGTGGAAGCCAATTTGCATAACATGATTCCTGAGGATGGCAAAAGAGATCTTTATGCTACTCTTCACAAAGGTCATCCTGACATGGAAGCAAATGAAAAGAACCTAAGCCCTGTAAGATGGAAACAGAAACCTCTTGTAGAGCAGCAACAAAACAAGAGCATTTCAGACCTTGCAATGAATCATGAAAACAGGAAGACATTAGATGAACATATAATAGAATTTTTGGAGCAAGATATCCCTATCAACCACCCTTTAGGAAAATTATTCACAAACTCTTATTCAAGTACCTCTAACCATAGAACTGAGAGAGAAACAGAAATATCCATCAAAAAGAGAGTTACCATCCATTTCCTAAGCAAACACAGAACTACCTTACAGGAACAGCATGGGAAGTTGATAATCCTACCTGATTCATTAGAAGAGCTGCTCTATATTGCTGGAGAAAAGTTTGGAGGCTACAAGCCTACAAAAGTAATTAACACAGAGAATGCAGAGATAGATGATATTAGTGTCATTCGAGATGGTgatcatctttttcttctttgcagTGACACTGAAAATTTAAGTTCATAA 2190 0.3982 MSFSRGQKFFKRFCVDELQMGSLPYSSFLSNDPLPSLGARINQETRLRRYIISPFDPRYRAWEMLLIVLVVYSAWICPFEFAFLPYKQDTLFIIDNIANGFFAIDIMLTFFVAYLDNHSYLLVDDPKKIAIRYISTWFIFDVCSTAPFQSISLLFTDHSSEIGFKVLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCSKLIAVTLFAVHCAGCFNYLIADRYPDAKRTWIGSVYPNFKELSLCERYVTAMYWSIVTLTTTGYGDLHAENTREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNHLPHHIQDQMLSHLCLKFKTEGLKQQETLNGMPKAIRASIAYHLFFPVVQKVYLFQGVSHDFLFQLVTEMEAEYFPPKEDVILQNESPTDLYMLVSGAVDLIRYDVDGHEQVLKQVIAGETFGEIGVLYCRPQPFTVRTTELSQILRLSRTSLMNTLHGYPEAAQIIMKNIFMKLKGHEGLDFEYPPRDPGLAVYQMHDRGNKGGSFSDACTNNSHVEANLHNMIPEDGKRDLYATLHKGHPDMEANEKNLSPVRWKQKPLVEQQQNKSISDLAMNHENRKTLDEHIIEFLEQDIPINHPLGKLFTNSYSSTSNHRTERETEISIKKRVTIHFLSKHRTTLQEQHGKLIILPDSLEELLYIAGEKFGGYKPTKVINTENAEIDDISVIRDGDHLFLLCSDTENLSS 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0446 729 Gene3D Jelly Rolls 344 504 IPR014710 -
Ssu2g0446 729 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 544 729 - -
Ssu2g0446 729 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 545 - -
Ssu2g0446 729 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu2g0446 729 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu2g0446 729 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu2g0446 729 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu2g0446 729 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu2g0446 729 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu2g0446 729 SUPERFAMILY cAMP-binding domain-like 304 494 IPR018490 -
Ssu2g0446 729 Pfam KHA, dimerisation domain of potassium ion channel 650 719 IPR021789 -
Ssu2g0446 729 ProSiteProfiles KHA domain profile. 651 729 IPR021789 -
Ssu2g0446 729 ProSiteProfiles cAMP/cGMP binding motif profile. 377 497 IPR000595 -
Ssu2g0446 729 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu2g0446 729 PANTHER POTASSIUM CHANNEL AKT1 544 729 IPR045319 GO:0005249|GO:0006813
Ssu2g0446 729 PANTHER POTASSIUM CHANNEL AKT1 1 545 IPR045319 GO:0005249|GO:0006813
Ssu2g0446 729 SMART cnmp_10 377 495 IPR000595 -
Ssu2g0446 729 CDD CAP_ED 377 491 IPR000595 -
Ssu2g0446 729 Gene3D - 60 300 - -
Ssu2g0446 729 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Ssu2g0446 729 Pfam Cyclic nucleotide-binding domain 397 480 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0446 Ssu-Chr2 26018126 26026299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0446 1 719 Ion Channels AT5G46240 60.876 0.0 888