Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0444 ATGTTGATATTAGTTCTTGGACTAGCTTCAGCTACTTTTCTAGTGATTGTTGCAGTTTATGTGCTCTATTACAAGAGAAGAATATCAAAACATGAGGGTAAGGACATTGAGAGCTCAGAACACAAGGAGGAGGAGGTGGCTCAGAAGGAGGACTTGATGATCTTTCAAGGCGGGGAGGACCTTACAATCTGTGACATATTGGATGCTCCAGGAGAAGTGATTGGAAAATCCAACTATGGGACACTGTATAAGGCTTTGCTGCAGAGGAGCAGCAAGGTGAGGCTGCTGAGGTTTCTGAGGCCAGTGTGCACTGCAAGGGGTGAAGAATTGGATGAAATGATTCAGTTTCTTGGTGGGATAAGGCATCCAAACTTGGTCCCTCTTCTGGGGTTTTACATTGGGCCAAGGGGTGAGAAGCTTCTTGTTCATCCCTTCTATAGGCATGGGAATCTCACTCAATTCATAAGAGATGGAAATGGAGAGTGTTACAAATGGTCTAACATATGTAGAATATCCATTGGTATAGCCAAAGGACTAGAGCATCTTCACACATCACGGGAGAAGCCTATTATCCATGGAAACCTCAAGTCTAAAAACATCCTTTTGGACCGCTCCTACCAACCGTACATCTCGGATTCTGGCCTACATCTTCTGTTGAATCCTACTGCTGGCCAAGAAATGCTTGAAAGTTCAGCAGCTCAGGGTTACAAGGCACCTGAGCTCATCAAAATGAAGGATGCAAGTGAAGAGAGCGATATATATAGCCTTGGTGTGATCTTGCTGGAATTGCTTTCAGGAAAGGAACCTATCAATGAGCACCCAACTCCTGATGAGGATTTCTATTTGccaaatttcatgaaaaatgcaGTCATTGGACACAGAATTGCTGATTTGTACCATCCTGCCATTCTTCTCAGAAACAGCAGAGATGACAAGATTCCAGTCACAGAAGAATGCATTCTCAAAGTTTTTCAACTTGCTATGGCTTGTTGCTCCCCTTCACCATCAGTTAGACCTAACATAAAGCAAGTCCTCAAGAAACTTGAAGAAATTATGCTCTAG 1062 0.4275 MLILVLGLASATFLVIVAVYVLYYKRRISKHEGKDIESSEHKEEEVAQKEDLMIFQGGEDLTICDILDAPGEVIGKSNYGTLYKALLQRSSKVRLLRFLRPVCTARGEELDEMIQFLGGIRHPNLVPLLGFYIGPRGEKLLVHPFYRHGNLTQFIRDGNGECYKWSNICRISIGIAKGLEHLHTSREKPIIHGNLKSKNILLDRSYQPYISDSGLHLLLNPTAGQEMLESSAAQGYKAPELIKMKDASEESDIYSLGVILLELLSGKEPINEHPTPDEDFYLPNFMKNAVIGHRIADLYHPAILLRNSRDDKIPVTEECILKVFQLAMACCSPSPSVRPNIKQVLKKLEEIML 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0444 353 SUPERFAMILY Protein kinase-like (PK-like) 71 351 IPR011009 -
Ssu2g0444 353 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 351 - -
Ssu2g0444 353 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 2 351 - -
Ssu2g0444 353 Pfam Protein tyrosine and serine/threonine kinase 72 348 IPR001245 GO:0004672|GO:0006468
Ssu2g0444 353 Gene3D Transferase(Phosphotransferase) domain 1 147 352 - -
Ssu2g0444 353 ProSiteProfiles Protein kinase domain profile. 68 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0444 353 Gene3D Phosphorylase Kinase; domain 1 34 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0444 Ssu-Chr2 25949922 25951804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0444 35 351 Carbohydrate Esterase AT5G61570 61.111 1.02e-138 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu2g0444 PK_Tyr_Ser-Thr 1e-32 CL0016