Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0420 ATGAACGCACCCATCATTGATCCGTTACAGGGAGATTTCCCGGAAGTGATAGAGGAGTATTTGGAACACGGGTGTATGAAATGTATTGCCTTCAATCGTCGTGGCACACTTCTTGCTGCTGGGTGCAACGATGGAAGTTGCGTTATCTGGGATTTTGAAACCAGGGGCATTGCTAAAGAGCTACGTGATAATGAATGTTCGTCTCCAATAACCAGTGTCTGTTGGTCAAAGTGTGGTAATCGAATTCTTGTATCTGCTGCTGACAAGTCATTGTTACTGTGGGATGTTATGAGTGGTAAGAGGATAACAAGAATAGTTTTACAACAAACCCCTCTACAAGCTCGTCTTCATCCGGGTTCCTCTAAACCATCTCTTTGCTTGGCATGCCCCCTCTCATGTGCTCCAATGATTGTTGACTTGTACACAGGAAATACAACTTTGCTTAAAGTTTCTATCATGGAGATATCCAATAATGGACCAACCCCTGCCTCACGTAACAGGTGCGCTGATGGAATTACCTCTTTCTCACCAACTGCTGCATGTTTTAGCAAGTATGGCAACCTGGTTTATGTGGGAAACTCGAAAGGGGAAATTCTTGTAATTAACCATATAGATGGTGAGGTGCGTGCCATGGTTCCTATCCCTGGTGGTTCTGTAGTGAAGAACATTGTGTTCAGCAGGAATGGACAGTATCTTCTAACAAACTCAAATGATCGAATAATCAGGATCTATGAAAATCTTCTACCATTGAAAGATGAAGTTAGAGCACTTGATGACCTGAATGGGAACCTCAATGATTTAAATGGTGTTGAGAAGTTGAAGGCTTTAGGATCAAAATGCCTAATATTATTCCGGGAGTTTCAAGATTCAATCACAAAGGTGCACTGGAAAGCACCTTGTTTCAGTGGTGATGGTGAGTGGGTTGTTGGTGGTTCTGCTAGTAAAGGAGAGCATAAGATTTACATATGGGATAGAGTTGGGCATCTTGTGAAAATCCTTGAAGGACCTAAGGAAGCCCTTATTGATTTAGCATGGCATCCTGTACGTCCTATTATTGTATCTGTTTCTTTGAATGGCATAGTTTATATCTGGGCTAAAGATTACACCGAGAACTGGAGTGCATTTGCTCCTGATTTCAAAGAGCTTGAGGAAAATGAGGAGTATGTTGAGCGAGAagatgaatttgatttgattcccGAGACCGAGAAGGTAAAAGGATCTGATGttaatgaagatgatgaagTCGACATTGTAACGGTGGAGAAAGATCCTGCTTTCAGTGACTCTGATATGTCTCAAGAAGAGTTATGCTTCTTGCCAGCAACTCCCAGTTGTGATGCTCCTGAACAGCCAGACAAGTTCATAGAAAGTTCTTCAAAATTGGTGGACAGCAATAACTCTGGATCCCCATTTTCAGAAGAGGCTGGACCAAATGAACATACCATGAATCATAACTCAAGTCCAGTTGAAGATGATGCTGGGGGAACACGAATTAAAAGAAAGCGGAAACCTTCAGAGAAGCTGTTGGAGTTGCAGgcagaaaaaataaagacacCCTTAAAATCTAGCAAATCATCAAAATCCAAAAGTAAATCTTTGGTTGATGAGGATATGGGTAATGACTTTTATGGTGATGAACTTTCTGATGAATAA 1653 0.4035 MNAPIIDPLQGDFPEVIEEYLEHGCMKCIAFNRRGTLLAAGCNDGSCVIWDFETRGIAKELRDNECSSPITSVCWSKCGNRILVSAADKSLLLWDVMSGKRITRIVLQQTPLQARLHPGSSKPSLCLACPLSCAPMIVDLYTGNTTLLKVSIMEISNNGPTPASRNRCADGITSFSPTAACFSKYGNLVYVGNSKGEILVINHIDGEVRAMVPIPGGSVVKNIVFSRNGQYLLTNSNDRIIRIYENLLPLKDEVRALDDLNGNLNDLNGVEKLKALGSKCLILFREFQDSITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRVGHLVKILEGPKEALIDLAWHPVRPIIVSVSLNGIVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPETEKVKGSDVNEDDEVDIVTVEKDPAFSDSDMSQEELCFLPATPSCDAPEQPDKFIESSSKLVDSNNSGSPFSEEAGPNEHTMNHNSSPVEDDAGGTRIKRKRKPSEKLLELQAEKIKTPLKSSKSSKSKSKSLVDEDMGNDFYGDELSDE 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0420 550 Gene3D - 139 420 IPR015943 GO:0005515
Ssu2g0420 550 Gene3D - 5 132 IPR015943 GO:0005515
Ssu2g0420 550 SUPERFAMILY WD40 repeat-like 23 364 IPR036322 GO:0005515
Ssu2g0420 550 Pfam WD domain, G-beta repeat 22 51 IPR001680 GO:0005515
Ssu2g0420 550 Pfam WD domain, G-beta repeat 280 324 IPR001680 GO:0005515
Ssu2g0420 550 Pfam WD domain, G-beta repeat 68 95 IPR001680 GO:0005515
Ssu2g0420 550 MobiDBLite consensus disorder prediction 459 550 - -
Ssu2g0420 550 ProSitePatterns Trp-Asp (WD) repeats signature. 38 52 IPR019775 -
Ssu2g0420 550 ProSiteProfiles Trp-Asp (WD) repeats profile. 26 60 IPR001680 GO:0005515
Ssu2g0420 550 PANTHER RETINOBLASTOMA-BINDING PROTEIN 5 1 531 IPR037850 GO:0048188
Ssu2g0420 550 ProSiteProfiles Trp-Asp (WD) repeats profile. 67 104 IPR001680 GO:0005515
Ssu2g0420 550 MobiDBLite consensus disorder prediction 459 490 - -
Ssu2g0420 550 SMART WD40_4 13 51 IPR001680 GO:0005515
Ssu2g0420 550 SMART WD40_4 205 245 IPR001680 GO:0005515
Ssu2g0420 550 SMART WD40_4 326 365 IPR001680 GO:0005515
Ssu2g0420 550 SMART WD40_4 54 95 IPR001680 GO:0005515
Ssu2g0420 550 SMART WD40_4 277 324 IPR001680 GO:0005515
Ssu2g0420 550 SMART WD40_4 162 202 IPR001680 GO:0005515
Ssu2g0420 550 MobiDBLite consensus disorder prediction 493 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0420 Ssu-Chr2 24787521 24793218 Dispersed/Wgd