Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0410 ATGCGCAATTCAAAGTCTGCAGCGTCTCTTCTCATAGCACGTGCCAAGTGCTTCCAACTTCACCACCACACACGTCGCTGCgtcccttcttcttcttcttcttcaacctCAACCCCATTCTTCAGGTTTCACCCTTGGCTTTCTTCCTTGTGCAGTGCTAAATCCCTCATATCCACGCGCCTCTTCTCTAGCCACTACTCCCTCGAACAGTTCTCCGATGACGAATACGACTGTGACTTCGAGAACCAACagGCATCGTCAACGGTGGCCAATGTGGATGAGTGGAAATGGAAACTCAGCATGCTGTTACGCAGCGAAAAGGACCAGGAGATTATATCCAGAGACAGAAAAGATAGGAGGGACTATGAACAGATAGCTAACCTTGCCAAAAGAATGGGGCTTTACAGTGAGTTGTTTGGAAAAGTGGTTGTTGCAAGCAAGGTGCCTCTTCCTAACTACCGTCCAGATTTGGATGACAAACGTCCACAAAGAGAGGTGGTGATTCCACTAAGCTTGCAAAGGAGGGTTGAGGGTTTGTTGCAGGAATACCTTGATAGACTTCAGTTGAATTCTGCAAAGACAACTGACAGCTTGGATGATATGAACTCCACCAATCAAGTTAAAGATATACACATGGATGAAAATGTCGATTCTTTTGTGGATGAATCTGTTATGGAAAAGGTTCTCCAGAAGAGGAGTTTGAGGATACGTAATATGCAGAGAGCTTGGCAGgAATCACCTGAAGGCAGGAAGATGCTGGAATTCCGGAAGTCTCTACCATCATTCCACGAGAAGCAAGGTTTACTTCAAGCTATAGCACATAATCAGGTGATAGTTATATCTGGAGAGACTGGCTGCGGTAAAACCACTCAACTTCCTCAGTATGTATTAGAATCAGAGATTGAGTCTGGCCGTGGAGCATTTTGTAGCATAATTTGCACACAGCCTCGAAGGATATCTGCTATGGCAGTGGCTGAGAGAGTGTCAGGCGAGCGAGGAGAGCCTCTTGGTGAAACAGTTGGCTTCAAAGTTCGATTAGAAGGAATGAAAGGGAAAAACACCCATCTGCTATTTTGTACCAGTGGTATATTACTTAGAAGGTTGCTGAGTGATCGAAACCTGAATGGGATAACCCATGTTTTTGTGGATGAAATTCATGAAAGAGGCATGAATGAAGACTTCTTACTGATTGTGTTAAAGGATCTGCTACCACGGCGTCGGGATTTAAGATTGGTTTTAATGAGTGCCACCTTGAATGCTgagcttttttcaaattattttggaGGTGCTCCTACATTTCATATTCCGGGTTTCACCTATCCAGTTAGAGCTCACTTTTTAGAGGATGTTTTGGAAATCACTGGATATAAATTGACTTCCTTCAACCAAATTGATGATTATGGTCAGGAGAAAATGTGGAAAACACAAAAGCAACTAGCACCACGGAAGAGGAAAAACCATATCACTGCTCTTGTTGAGGATGCTCTTTCTAAATCAAGCTTTGAGAACTATAGCTCCAGGGCACGTGATTCACTATCATCTTGGGTACCTGACTGCATAGGGTTTAATCTCATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGGTCAGGTGCTGTCTTGGTGTTTATGACTGGGTGGGAGGATATAAGCTCTTTAAGAGATCAGCTTAAAGCGCATCCTCTTTTAGGAGATCCCAATAGGGTTTTACTTCTAACGTGTCATGGTTCAATGGCAGCTTCAGAACAGaaaCTCATATTTGAGAAACCACCTACAAATATAAGGAAAGTAATACTTGCTACAAATATGGCAGAGGCAAGTATTACAATCAATGACATAGTTTTTGTGGTTGATTGCGGAAAAGCAAAAGAGACCACTTATGATGCTTTGAATAACACGCCATGTCTTCTACCTTCTTGGATATCACAAGCATCTGCTCGGCAGAGAAGGGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATGCTACCACCTTTACCCCAAATGTGTTTATGAAGCCTTTTCTGAATATCAACTTCCTGAACTACTGAGAACGCCTTTGAACTCTCTTTGCTTGCAAATAAAAAGCTTGCAGGTTGAGAGCATAGGAGAGTTCTTGTCAGCAGCTTTACAGGCACCAGAGCCACGAGCTGTTCAAAATGCTATTGGTTTTCTCAAGATGATTGGTGCATTAGATGAAAACGAAAATCTTACAAATCTTGGGAACTTTCTCTCTATGCTTCCCGTAGATCCCAAGCTgggaaaaatgttaataatggGAGCTATATTTCGATGCTTTGATGCTGTTCTTACAATAGTAGCTGGCCTTAGTGTCAGGGATCCTTTCCTTTTGCCCCAAGACAAGAGGGATTTAGCAGGGACAGCAAAGTCTAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCAGAGAGAGAAGGATCGGCTTATGAATACTGCTGGAGAAATTTTCTCTCTGCCCAAACTCTTCAGGCTATTCATTCACTTCGGAAGCAGTTTAGCTTCATCTTGAAAGAAGCTGGCTTGGTAGATGCAGATGCAAGCATCATTAACAAATTGAGTCACAATCAGTCTCTTGTGCGTGCAGTCATATGTTCTGGACTCTTTCCTGGCATAGCATCAGTGGTGCACAGGGAGACATCCATGTCATTTAAAACAATGAATGATGGCCAGGTTTTATTATATGCTAATTCAGTGAATGCGCGTTACCAGACCATTCCTTACCCATGGTTGGTTTTTGGTGAGAAAGTTAAGGTCAATGCCGTTTTCATCCGTGATTCCACTGGTGTATCTGATTCAATACTTATCCTTTTTGGTGGTGGTTTAAGTAATGGGATACAGGCTGGGCATCTGAAAATGTTAGATGGGTACGTTGACTTCTTCATGGATCCTAGTTTAGCTGAGTGCTATTTGAAGCTTAAGGAAGAGCTCAATAAGCTTATCCAGAAGAAGCTGGAAGATCCTAGCATTGACATTCACAAGGAAGGGAAGTACTTGATGCTTGCTGTTCAGGAGCTGGCTTCAGGGGATCAATGTGAAGGAAGATTTGTATTTGGCCGTGAAAGCCGGAAGCCTAAGGCCTCTAATGATGacaacaaattcacaaaagatGGGACAAATCCCAAGAGCTTGCTGCAAACACTGTTGATGCGAGCAGGGCACTCCCCaccaaaatacaaaacaaaacatcTCAAGACAAATGAGTTTAGGGCACTGGTGGAGTTTAAGGGAATGCAATTTGTTGGCAAACCGAAGAGAAACAAGCAACTTGCAGAAAGGGATGCTGCTATAGAGGCATTGGCTTGGTTGACCCACACCTCTGATAATAATCAGCATGAAGATGATAACTCTCCTCCTGATGTCACAGACAACATGCTAAAGCTCCTAGGGAAGCGTAGAAAATCAAAGCGACGCCATGATTGA 3474 0.4214 MRNSKSAASLLIARAKCFQLHHHTRRCVPSSSSSSTSTPFFRFHPWLSSLCSAKSLISTRLFSSHYSLEQFSDDEYDCDFENQQASSTVANVDEWKWKLSMLLRSEKDQEIISRDRKDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYLDRLQLNSAKTTDSLDDMNSTNQVKDIHMDENVDSFVDESVMEKVLQKRSLRIRNMQRAWQESPEGRKMLEFRKSLPSFHEKQGLLQAIAHNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVAERVSGERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGAPTFHIPGFTYPVRAHFLEDVLEITGYKLTSFNQIDDYGQEKMWKTQKQLAPRKRKNHITALVEDALSKSSFENYSSRARDSLSSWVPDCIGFNLIEAVLCHICRKERSGAVLVFMTGWEDISSLRDQLKAHPLLGDPNRVLLLTCHGSMAASEQKLIFEKPPTNIRKVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRAVQNAIGFLKMIGALDENENLTNLGNFLSMLPVDPKLGKMLIMGAIFRCFDAVLTIVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEAGLVDADASIINKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMNDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGGLSNGIQAGHLKMLDGYVDFFMDPSLAECYLKLKEELNKLIQKKLEDPSIDIHKEGKYLMLAVQELASGDQCEGRFVFGRESRKPKASNDDNKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDNSPPDVTDNMLKLLGKRRKSKRRHD 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0410 1157 CDD DEXHc_RHA-like 275 435 - -
Ssu2g0410 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 827 IPR027417 -
Ssu2g0410 1157 SMART ha2_5 720 811 IPR007502 GO:0004386
Ssu2g0410 1157 SMART ultradead3 256 450 IPR014001 -
Ssu2g0410 1157 MobiDBLite consensus disorder prediction 1036 1054 - -
Ssu2g0410 1157 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 877 957 IPR011709 -
Ssu2g0410 1157 Gene3D - 522 677 IPR027417 -
Ssu2g0410 1157 Gene3D - 1037 1125 - -
Ssu2g0410 1157 CDD SF2_C_RHA 513 666 - -
Ssu2g0410 1157 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 269 436 IPR014001 -
Ssu2g0410 1157 SUPERFAMILY dsRNA-binding domain-like 1048 1132 - -
Ssu2g0410 1157 Gene3D - 208 437 IPR027417 -
Ssu2g0410 1157 SMART helicmild6 552 658 IPR001650 -
Ssu2g0410 1157 Pfam Helicase associated domain (HA2) 721 807 IPR007502 GO:0004386
Ssu2g0410 1157 Pfam Helicase conserved C-terminal domain 527 657 IPR001650 -
Ssu2g0410 1157 PANTHER ATP-DEPENDENT RNA HELICASE 69 1047 - -
Ssu2g0410 1157 SMART DRBM_3 1058 1121 IPR014720 -
Ssu2g0410 1157 Gene3D - 700 802 - -
Ssu2g0410 1157 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 69 1047 - -
Ssu2g0410 1157 MobiDBLite consensus disorder prediction 1124 1157 - -
Ssu2g0410 1157 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 698 IPR001650 -
Ssu2g0410 1157 Pfam Double-stranded RNA binding motif 1058 1120 IPR014720 -
Ssu2g0410 1157 MobiDBLite consensus disorder prediction 1036 1057 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0410 Ssu-Chr2 24388980 24415227 Transposed