Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0408 ATGGCACCAAAACCCGTTTCCCTTTCTTATCTACTACTTTTAGTCTTGTTTCTTGCCATCCAACTTTCTGAGCAGTTAGAGTTTTCTCAGTCTCAAACACTTCTCAAAGTTCAGCAACTTCTTGGCTATCCATCAGCACTAGGTACCCTCAGCAGCACCACAGACTTTTGCAACATTGAACCTACCCCATATTTGACACTAGTCTGCTATGAGGATAGCTTGACACAGTTGCATGTTGTTGGCAACAATGAGTTCTCACCACTTCCTCAAAACTTCTCCTCAGATACTTTATTTGCTACACTAGGCACTCTATCAAGCTTGAAAGTCCTCTCTTTGGTTTCTCTGGGACTCTGGGGGGCCTTACCTGAAAGCATTGCTCAATTGTCTTCATTGGAAATACTTAACATTAGCTCAAACCACTTCAATGGAGTCATCCCTTCTCAACTTTCACTTCTGAGGAACCTGCAGTCTTTGGTGCTTGATGGTAACAACTTCAATGGTGAAATTCCCAACTGGGTAGGCTCACTTCAAGGTTTGGCTGTGCTTAGTATGAAGAACAACTGGCTTAGTGGGAGCCTGCCAACTTCATTGGATGCTCTTCATACCTTGAGAGTGTTAGATCTATCAAATAATCAGTTATCTGGGGAACTTCCTCATCTTAAGAATTTGGCAAACCTTCAAGTTCTTAACTTGGAAAACAACACATTTGGACCTCATTTTCCTTCTCTCCCCACCAAGTTAGTTTCCCTTGTGCTTAGAAACAACAGCTTCAGGCTTGGTGTCCCTTCTGGTTTAAGTTCTTTATATCTGCTCCAAAAGCTAGACCTTTCATTGAATGGTTTTGTGGGGCCACTTCCACCATCCTTCTTGTCACTGCCTTCCATCAATTACCTTGATGTTTCTTCAAATAAATTCACTGGGATGCTTTTCAATAGCATGTCATGCAATGATGATCTCCACTTTGTAAATTTGTCTTCAAATCTACTGAAAGGGGAGCTCCCCACTTGTTTAGAACCAAAGACCAGGGTTGTTTTGTATGCTAGAAACTGCTTATCTAATAAGAACCAAGATCAGCACCCTTCAGATTTCTGCAGCAATGAGGCTTTGGCAGTGACAATCATACCCCGTCAACAGAAGCGCAAGAGAACAACTAGTAAAGCAGTTCTTGTATCAAGTACGGGAGGTGTTGTTGGTGGAGTGTTGATTGTTGGAGTGGTTATCTTGGTTGTTAGCCGAGTTCATAAGAAACAAGTAGTGAAAATACCTTCAAAGTTCACTTTGGAGCATGTTATCAGCGAGGTAGATAATGAAGATAAAGTGAAAACTGCTACAAGGTTCATAATGGAGCATATCATCAAAAGGGTTCCTGACAAACATGCTGTGAAAACACTAACAAGATCCATAAAGGAGCATGTCATGAGCAAAGTGAATAACAAGCGTGTTGTGAGGGCATCGACAAGGTCCATAATAGAACATGTATCATCAGTAAACACAGCAAAACTACTCACGGATGCAAGGTACATATCAGAAACAATGAAGATGGGAGCCAGCCTTCCTGCTTATAGGACCTTTGCTTTGGATGAACTTAAGGAAGCTACAAGTAATTTTGATGCATCATGTTTAATAAGTGATGGCCCACATGGTCAGATTTATAAAGGGGTGCTCTCTGATGGAATGCACATTGCTATTAGaggtttgaaaatgaaaaagagacaTGGCCCTCAGACTTACATGCACCATGTTGAGTTGATTTCAAAACTAAGGCATTCATACTTGGTTAGTGCACTTGGGCATGCTTTTGAGTGCAACCAGGATGATTCATGTGTAAACAATGTATTTCTCATATTTGAGTTTGTTCCAAATAGAAGTTTAAGGAGCTGCGTTTCTGGATCTTCTGGGGAAAAGCTTGCTTGGACTCAGAGAATAGCAGCTGCGATTGGAGTGGTGAAAGGCATTCAATTTTTGCATACAGGGATAGTGCCTGGactatattcaaataatttgaagATAACAGATATTCTTTTGGATAACAATCACAATGTTAAAATAAGCAGTTACAATCTGCCACTCTCtggtgaaaataaaagaatgATCAGCAATGGAACTTCCCCTGGATTAAAAGGAAATGTCCAagcaagGATCAAAGATGCAGACAAGAATGATGTCTATGATATTGGGGTAATATTGCTAGAAATCATTCTGGGACGACCAATAATGTTCCACAATGAAGTTGGAACACTAAAAGATCTTTTACAGGTAAGCATCAAAACTGATGATATAGCTAGAAGGAGTATTGTTGACCCAGCCGTTCACAAGGAATGTTCAGATGAATCATTAATGACAATGATGGAGATATGTGTAAGGTGTCTCTCTAGTGAACCAACTGATAGGCCCTCTGTGGAAGATATTCTCTGGAATTTGCAGTTTGCAGCACAAGTTCAGAATTCGTGGAGAAGAGACTCAAGCGATCACATTTACTCCCCTGCACCATCCTCCAGGGAGACATAA 2508 0.3995 MAPKPVSLSYLLLLVLFLAIQLSEQLEFSQSQTLLKVQQLLGYPSALGTLSSTTDFCNIEPTPYLTLVCYEDSLTQLHVVGNNEFSPLPQNFSSDTLFATLGTLSSLKVLSLVSLGLWGALPESIAQLSSLEILNISSNHFNGVIPSQLSLLRNLQSLVLDGNNFNGEIPNWVGSLQGLAVLSMKNNWLSGSLPTSLDALHTLRVLDLSNNQLSGELPHLKNLANLQVLNLENNTFGPHFPSLPTKLVSLVLRNNSFRLGVPSGLSSLYLLQKLDLSLNGFVGPLPPSFLSLPSINYLDVSSNKFTGMLFNSMSCNDDLHFVNLSSNLLKGELPTCLEPKTRVVLYARNCLSNKNQDQHPSDFCSNEALAVTIIPRQQKRKRTTSKAVLVSSTGGVVGGVLIVGVVILVVSRVHKKQVVKIPSKFTLEHVISEVDNEDKVKTATRFIMEHIIKRVPDKHAVKTLTRSIKEHVMSKVNNKRVVRASTRSIIEHVSSVNTAKLLTDARYISETMKMGASLPAYRTFALDELKEATSNFDASCLISDGPHGQIYKGVLSDGMHIAIRGLKMKKRHGPQTYMHHVELISKLRHSYLVSALGHAFECNQDDSCVNNVFLIFEFVPNRSLRSCVSGSSGEKLAWTQRIAAAIGVVKGIQFLHTGIVPGLYSNNLKITDILLDNNHNVKISSYNLPLSGENKRMISNGTSPGLKGNVQARIKDADKNDVYDIGVILLEIILGRPIMFHNEVGTLKDLLQVSIKTDDIARRSIVDPAVHKECSDESLMTMMEICVRCLSSEPTDRPSVEDILWNLQFAAQVQNSWRRDSSDHIYSPAPSSRET 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0408 835 Gene3D Transferase(Phosphotransferase) domain 1 619 827 - -
Ssu2g0408 835 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 476 826 - -
Ssu2g0408 835 ProSiteProfiles Leucine-rich repeat profile. 202 224 IPR001611 GO:0005515
Ssu2g0408 835 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 434 - -
Ssu2g0408 835 SUPERFAMILY RNI-like 72 341 - -
Ssu2g0408 835 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Ssu2g0408 835 Pfam Protein kinase domain 543 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0408 835 ProSiteProfiles Protein kinase domain profile. 536 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0408 835 Pfam Leucine Rich repeats (2 copies) 202 234 IPR025875 -
Ssu2g0408 835 Gene3D Phosphorylase Kinase; domain 1 496 618 - -
Ssu2g0408 835 Gene3D Ribonuclease Inhibitor 242 369 IPR032675 -
Ssu2g0408 835 Gene3D Ribonuclease Inhibitor 29 149 IPR032675 -
Ssu2g0408 835 SUPERFAMILY Protein kinase-like (PK-like) 515 809 IPR011009 -
Ssu2g0408 835 Gene3D Ribonuclease Inhibitor 150 241 IPR032675 -
Ssu2g0408 835 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 11 434 - -
Ssu2g0408 835 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 476 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0408 Ssu-Chr2 24344913 24349846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0408 43 832 Miscellaneous Gene Families AT3G03770 51.564 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Ssu2g0408 Pkinase 5.3e-15 CL0016