Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0392 ATGGACTTAAGGCTCACAGGGCCTTACACCCTATGCGTGGACCTTCTCTGCGAAGACGACCCCAACACTTGCTTCCCCCACCTCAAACCCGGCCTCCTCATCCTCACCACGCACCACCTCCTCTGGGTCCCGGACTCCGCCTCCGCCGTCCCCCTCGCCGCCGTCTCCCACATTTTCTCCCACAAGAAGTCCCTCCGGTCCGTCTTCGCCTCTCCGCGGGTCCAGTTCCAGGTGTCGCTGTCGCCGGAGGGCAGGGTCGCGGCGTCGGGATCGCGATCGGTGGTGGTTACGGCGGTGGTGAGGGGGAAGGGGGACTGCGACGCGTTTCTGACCAAGTTTTGGGAGAATTGGCGCGCCAGGGCGTGGGAGGAGGCGGGGAGTGGGTCGAGTTTGGGTTCGAATGCGGCGGCGGCAGTGGTGGCGGCAACAGCGACGTCGTCGAGCGGGATTTATTTGAGTGACGGGACGGTGAGGATGGTGGGAGTGTCGGGGATATTGAGGAAGGAGCAGGAACTGTGGGAGAGTACTGATAGGAGCTTGCAGGAGGCTTTTCAGGATTTGAATGCTCTCATGAGCAAGGCTAAAGAGATGGTGGTGCTAGCAGAGAAAATGAGGCTAAAACTTTTGTCTGGCTCAAATTCTCAAACCAATGCAACTAATGATGAGGAGATGGGTTCAAAGGAAGAGATGCAAGATTGGTTATTGAGTGTTGGTATTATGTCCCCTGTTACCAAAGAGTCTGCGGGTGCTTTGTATCATCAACAGCTTTCTCGTCAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAGAGCTGGTGGAATTATCAATcttattgatatatattgtcTCTTCAATCGTGCTCGTGGCACAGAATTGATCTCACCGGATGATTTGTTGCAAGCATGTTCTCTGTGGGAGAAGTTTGATGTCCCAGTGGTTCTGCGAAAGTTTGATAGTGGAGTCATGGTAATACAAACCAAGTCCCAACGTGATAAGGAGGTTTTTGCTAAAATCAAGATGCTTGTTATGAAACCTGATGCTCTTCGAGCTGGGATAAGTGCTAGTGATGCTGCAAGGACACTAGGGGTTGCCCCAGCAATGGCAAAGGAGCATCTCTTGTCTGCTGAGAGCAAGGGTATGCTTACTAGATCACTTTCTTCAATGCTTTTTTGGCTACATAACCGACTTCTGATTTTTGTGGAATCTTTCCCAGGTTTACTTTGCAGAGATGTAAGCCCTGATGGATTTCGCTTTTATATTAACTTGTTCCCTGAAATTGATCGAGATGATATGTATTTAATGAAAGATCAGAGAATTTATGCCTCGTGGGTACAGGCTAACCATACTCATGCTTAG 1356 0.5022 MDLRLTGPYTLCVDLLCEDDPNTCFPHLKPGLLILTTHHLLWVPDSASAVPLAAVSHIFSHKKSLRSVFASPRVQFQVSLSPEGRVAASGSRSVVVTAVVRGKGDCDAFLTKFWENWRARAWEEAGSGSSLGSNAAAAVVAATATSSSGIYLSDGTVRMVGVSGILRKEQELWESTDRSLQEAFQDLNALMSKAKEMVVLAEKMRLKLLSGSNSQTNATNDEEMGSKEEMQDWLLSVGIMSPVTKESAGALYHQQLSRQLADFVKVPLERAGGIINLIDIYCLFNRARGTELISPDDLLQACSLWEKFDVPVVLRKFDSGVMVIQTKSQRDKEVFAKIKMLVMKPDALRAGISASDAARTLGVAPAMAKEHLLSAESKGMLTRSLSSMLFWLHNRLLIFVESFPGLLCRDVSPDGFRFYINLFPEIDRDDMYLMKDQRIYASWVQANHTHA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0392 451 Pfam EAP30/Vps36 family 160 383 IPR040608 -
Ssu2g0392 451 Gene3D - 16 128 IPR011993 -
Ssu2g0392 451 SUPERFAMILY "Winged helix" DNA-binding domain 242 325 IPR036390 -
Ssu2g0392 451 Gene3D - 328 397 IPR036388 -
Ssu2g0392 451 SUPERFAMILY PH domain-like 20 109 - -
Ssu2g0392 451 Gene3D - 249 326 IPR036388 -
Ssu2g0392 451 Gene3D - 175 248 - -
Ssu2g0392 451 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36 24 431 IPR037855 GO:0000814|GO:0032509|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0392 Ssu-Chr2 23624443 23634339 Proximal