Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0350 ATGTCTTCCTTGAAATCTTATGGCAAAGTTGATGAAGCCAACCCAGCCATGCTCGAAACTCGCCACAAAACCCGAAAGCGAGTCACCATCATAGCCTTGTCCACAATAGTCCTCATTGGAGTTGTGTGTGCAGCTGTGTTTGGAACCGTTgctcacaacaacaacaacaactcaaatgATGAAAACAGTGCTCCATTTCTTTCCAATTCGGTGAAAGCTGTTTGTGATGTGACACTTTACAAGGACGCATGTTATAGCAGCCTCGGTCCTCTTGTGCACTCGGGTCAGGTCCAACCTCAGGAGTTGTTCTTGTTGTCTATTGAAGTGGCCGTAGCTGAGGTTTCAAGGGCCGTTCAGTATTTCTCTGATAAGGGGGTTTTAAGTGGCTTGAATGTTATTGATAACAGGACCAAGCAAGGTTTTACAAACTGCAAGGATCTTTTGGGTCTTGCAGTTGATCATCTGAATAGCTCTTTGTCTTCTGGGGGGAACGCTTCCTTGCTTGATGTGTTTGAGGATCTCAGAACTTGGTTAAGTGCTGCAGGTACTTACCAGCAAACCTGCATTGATGGTTTTGAAGAGGCAGAAGAAGCATTGAAGACCAGTGTTGTAAACAATCTAAAAAATTCTACAGAGTTCACCAGTAACAGTCTTGCCATTGTTACATGGCTTAACAAGGCTGCAAGCACAGTGAACTTAAGACGCTTGTTGAATACTTTGCTAATGGAAGAACCGAAATGGCTTCATTCTAAAGACCGGAAGCTGCTTCAAGCAGATGATTTGAACAGGAAAGCTGACATTGTTGTAGCAAAAGACGGCAGCgggaaatttaaaacaattactgCTGCACTTAAACATGCCCCTGAAAAAAGTGACAAAAGGACTGTGATCTATGTGAAGAAGGGGgtttattatgaaaatgtgaGGGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAACGCTACAATTGTATCTGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACTGCAACATTTGCGGTGTTTGGGAAGAATTTCATTGCTAGGGACATGGGATTTCGCAACACAGCTGGTCCACAGAAGCACCAGGCAGTGGCACTGATGACAAGTGCTGATCAAGCAGTTTACTATAGGTGTCAAATTGATGCATTTCAGGACACACTCTATGCTCTGTCCAACCGCCAATTCTATAGAGAATGCAATGTTTATGGCACAGTTGATTTCATTTTTGGCAATTCAGCAGTTGTCTTCCAAAACTGCAACATTTTGCCAAAGGTGCCTATGATAGGACAGCAGAACACCATAACAGCCCAGGGCAAAACTGACCCCAACATGAACACAGGAATTTCTATTCAAAATTGCAACATTACACCCTCTGGGGACTTAAGTTCTGTCCAAACATACCTTGGAAGACCCTGGAAGAACTACTCAACCACAGTGTTCATGCAATCCACATTGGGGAGTTTCATTAACCCAAATGGATGGTTACCATGGGTGGGGAACTCAGCACCAGATACCATATTTTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGGGTGAAGTGGAAGGGTTTGAAAACCATTACAACAAAACAAGCTGGCTTGTTTACTGTCAAGGCTTTGCTTTCAGGGGACAGATGGATTCCTGCTTCGGGTGCCTCCTTTAAATCTTCTATGTGA 1719 0.4218 MSSLKSYGKVDEANPAMLETRHKTRKRVTIIALSTIVLIGVVCAAVFGTVAHNNNNNSNDENSAPFLSNSVKAVCDVTLYKDACYSSLGPLVHSGQVQPQELFLLSIEVAVAEVSRAVQYFSDKGVLSGLNVIDNRTKQGFTNCKDLLGLAVDHLNSSLSSGGNASLLDVFEDLRTWLSAAGTYQQTCIDGFEEAEEALKTSVVNNLKNSTEFTSNSLAIVTWLNKAASTVNLRRLLNTLLMEEPKWLHSKDRKLLQADDLNRKADIVVAKDGSGKFKTITAALKHAPEKSDKRTVIYVKKGVYYENVRVEKTKWNVMIIGDGMNATIVSGSLNFVDGTPTFSTATFAVFGKNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYRCQIDAFQDTLYALSNRQFYRECNVYGTVDFIFGNSAVVFQNCNILPKVPMIGQQNTITAQGKTDPNMNTGISIQNCNITPSGDLSSVQTYLGRPWKNYSTTVFMQSTLGSFINPNGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLKTITTKQAGLFTVKALLSGDRWIPASGASFKSSM 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0350 572 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Ssu2g0350 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 224 IPR035513 -
Ssu2g0350 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 67 224 IPR006501 GO:0004857
Ssu2g0350 572 Pfam Pectinesterase 266 558 IPR000070 GO:0030599|GO:0042545
Ssu2g0350 572 PANTHER PECTINESTERASE 5 570 - -
Ssu2g0350 572 SUPERFAMILY Pectin lyase-like 264 568 IPR011050 -
Ssu2g0350 572 SMART PMEI_2 66 220 IPR006501 GO:0004857
Ssu2g0350 572 PANTHER PECTINESTERASE 5 570 - -
Ssu2g0350 572 Pfam Plant invertase/pectin methylesterase inhibitor 70 220 IPR006501 GO:0004857
Ssu2g0350 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 226 IPR035513 -
Ssu2g0350 572 Gene3D - 261 572 IPR012334 -
Ssu2g0350 572 CDD PMEI-like_3 73 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0350 Ssu-Chr2 22448431 22451539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0350 7 572 Carbohydrate Esterase AT3G10710 56.942 0.0 670
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1848 8 48123156 48125016 Ssu2g0350 2 22448431 22451539 PCT