Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0344 ATGGAAGAACAAGGGTTGTGTCAAAACTCAGTTCCTAGTTCAGGTTTTGTTGATAAAACAAGGATTGTGGAGGTTAAACCCCTGCGTAGTTTGGCACCTGTGTTGCCCAAATCTCTTCAGTCTTCTCTCTCTGGCCGGTACCCTTCTGTGTTTCCtccatttgttttgtttaaggAACCTGAAGAGTCTCAACCATCACCTGCTCCCATACCAGCTCCCATAAGGTCCTATAGAAACCCACTAGATGAAGAAGAAACCCCTCATGGAGACAATGGAGATACTTCTTCACCTATGGAGGGTCTCAATGGTAAGAGTGTCGGCGATAGCCAAAAGCGTGCAGTGCCGCCTTTGAACAGCTGCAAATCGTCCCAAAAGAGGAGTAAGAAAACTCAGGAGTCACAAAATGATTCGAGTTCTTCGGTTGGTGGTATTAGCGCGGCCCGAAGGGATGATGGGGATCACGATGTGGTTAATCTTGTGCTCATGACATATGATTCTCTTCGGAGAAGGCTCTGCCAACTCGAGGATGCCAAGGAGTTGAACACAACGATGGCAATCAAGCGTGCGGATTTGAGAGCAAGCAATGCGTTGACGGCCAGAGCGTTTCGAACAAACATGAGGAAAAGAGTAGGAGCAGTGCCTGGGGTTGAGATTGGGGACATTTTCTTTTTGCGGATAGAAATGGTTCTGGTGGGTTTACATGGCCAGTCAATGGGCGGAATTGACTACATGACTATCAAGGATGAGCATCAAGAGGAACCGGTGGCTTTAAGCGTTGTTTCGTCGGGAGTATATGATAATGATGCAGAGGATaatgatgttttaatttatagtggTCAGGGTGAGAACTTCAACAAGAAAGATAAGCACGTGATTGATCAGAAGCTTCAAAGGGGCAATCTTGCTTTAGATAGAAGTTCAAGACGGAAGAATGAAGTAAGAGTCATCCGGGGCTTGAGAGATGCTGtgaacaaaaatgcaaaaatctaTGTCTATGATGGTCTGTATAAAATCCAAGATGCTTGGATAGAAAAAGGGAAATCTGGTGGCGGTGTATTCAAGTACAAGTTTGTTAGATTGCCTGGACAACCCAGTGCTTTTGCTGTCTGGAAGTCGGTTCAGAAGTGGAAGATGGGCTCACCTTCAAGGACTGGCCTTATTCTTGCAGACCTCTCTACAGGAGCTGAGAGTATTCCTGTATCACTTGTCAATGAAGTTGATAATGAGAAGGGGCCTgcttttttcacttatttcctTTCTCTCAAACATCCAAAACCATTCAGTTTGAGGCAACCTTCATATGGCTGCAACTGTAATAAAGCATGTGTCCCTGGTGATTTGAACTGCTCTTGCATTCAAAGAAATGAAGGTGACTTTCCATATACTGCAAATGGTGCTCTAGTGAGTCGGAACCAATTGGTTCATGAGTGTGGCCCAATGTGTAAGTGTTTTCCTAACTGCAAGAATCGAGTATCCCAGACTGGTTTGAAGCACCAAATGGAAGTGTTCAGAACAAAAGATAGAGGGTGGGGACTTCGATCACTGGATCCTATACGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTATTGACAGAGCCAAGGTAAATCAGAATGGGGGATATAACGactaa 1638 0.4304 MEEQGLCQNSVPSSGFVDKTRIVEVKPLRSLAPVLPKSLQSSLSGRYPSVFPPFVLFKEPEESQPSPAPIPAPIRSYRNPLDEEETPHGDNGDTSSPMEGLNGKSVGDSQKRAVPPLNSCKSSQKRSKKTQESQNDSSSSVGGISAARRDDGDHDVVNLVLMTYDSLRRRLCQLEDAKELNTTMAIKRADLRASNALTARAFRTNMRKRVGAVPGVEIGDIFFLRIEMVLVGLHGQSMGGIDYMTIKDEHQEEPVALSVVSSGVYDNDAEDNDVLIYSGQGENFNKKDKHVIDQKLQRGNLALDRSSRRKNEVRVIRGLRDAVNKNAKIYVYDGLYKIQDAWIEKGKSGGGVFKYKFVRLPGQPSAFAVWKSVQKWKMGSPSRTGLILADLSTGAESIPVSLVNEVDNEKGPAFFTYFLSLKHPKPFSLRQPSYGCNCNKACVPGDLNCSCIQRNEGDFPYTANGALVSRNQLVHECGPMCKCFPNCKNRVSQTGLKHQMEVFRTKDRGWGLRSLDPIRAGTFICEYAGEVIDRAKVNQNGGYND 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0344 545 SMART preset_2 388 482 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu2g0344 545 ProSiteProfiles SET domain profile. 498 545 IPR001214 GO:0005515
Ssu2g0344 545 ProSiteProfiles Pre-SET domain profile. 434 495 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu2g0344 545 Pfam Pre-SET motif 392 490 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu2g0344 545 Gene3D SET domain 368 545 IPR046341 -
Ssu2g0344 545 Pfam SAD/SRA domain 210 363 IPR003105 -
Ssu2g0344 545 SUPERFAMILY SET domain 373 537 IPR046341 -
Ssu2g0344 545 SMART G9a_1 206 363 IPR003105 -
Ssu2g0344 545 ProSiteProfiles YDG domain profile. 211 359 IPR003105 -
Ssu2g0344 545 SUPERFAMILY PUA domain-like 194 381 IPR015947 -
Ssu2g0344 545 Gene3D - 209 367 IPR036987 -
Ssu2g0344 545 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 15 541 - -
Ssu2g0344 545 MobiDBLite consensus disorder prediction 60 149 - -
Ssu2g0344 545 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 23 545 IPR025794 GO:0016571
Ssu2g0344 545 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0344 Ssu-Chr2 22113416 22115053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0344 9 540 Su(var)3-9 homologs AT1G73100 49.192 5.15e-175 508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1841 8 47828322 47829590 Ssu2g0344 2 22113416 22115053 PCT