Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu2g0305 | ATGGATGGAACACTACTCAATGTGAAATCAATATATTCCTTTGTTGTCCTGCTATTGCTAAGCTTCAAATCACTTGTTACAAAGGCACAATCACTCAACTACATGGGAGATGACTGCCATAACATCACCCAAAAACCTCTCAGCAATGCATACCAAGCCAATCTTAACAGCGTCCTCTCTTGGCTATCCTCAGATGCAGCCACAAGCAAAGATGATGAGAAGAAAAAGCAACTTGATTGGAAACTAAGATTAAACATTATTAATGGAATAGCAAGAGGTATATTATACCTTCATGAGGACTCTCGACTCAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGAGATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAAAGGGCCAGAACCAGGCTAATACAAAACGTGTAATGGGCACCTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATTATTTGTGGGAAAAAGAACAGTGGATTCTATTTATCAGAATTACGTCAAAGTCTTCTTTTATATGCTTGGAAAATATGGTGTGCAGGAAAATATTTGGAACTTATGGACCCAGTGCTGGAAAATTCTTGCATTGACAGTGAAGTTGTGAAGTGCATACACATTGGTCTATTGTGTGTTCAAGAAGATGCAGCAGATAGACCAACCATGTCCACTGTTGTTGTAATGCTAGCGAGTGACACAATGGCCCTTCCAAAACCTAACCAGCCAGCATTTTCAGTTGGAAGAATGGCATTAGGCATGAACCCAAGAGATGCATGGGTAAATTATTGGGAGAGaattttttATGATGAGAAGAAAAAGCAACTTGATTGGAAACTAAGATTAAACATTATTAATGGAATAGCAAGAGGTATATTATACCTTCATGAGGACTCTCGACTCAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGAGATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAAAGGGCCAGAACCAGGCTAATACAAAACGTGTAATGGGCACCTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATTATTTGTGGGAAAAAGAACAGCGGATTCTATTTATCAGAATGCGGTCAAAGTCTTCTTTTATATGCTTGGAAAATATGGAGTGCCGGAAAATATTTGGAACTTATGGACCCAGTGCTGGAAACTTCTTGCATTGACAGTGAAGTTGTGAAGTGCATACACATTGGTCTATTGTGTGTTCAAGAAGATGCAGCAGATAGACCAACCATGTCCACTGTTGTTGTAATGCTAGCGAGTGACACAATGGCCCTTCCAAAACCTAACCAGCCAGCATTTTCAGTTGGAAGAATGGCACTAGGGGATGCATCTACTTCAAAAAGTTCCAAGAATCGTTCCATTAATGATGTAACAATCTCTAACATTTTACCAAGGTAA | 1578 | 0.3872 | MDGTLLNVKSIYSFVVLLLLSFKSLVTKAQSLNYMGDDCHNITQKPLSNAYQANLNSVLSWLSSDAATSKDDEKKKQLDWKLRLNIINGIARGILYLHEDSRLRVIHRDLKASNVLLDHEMNPKISDFGLARAFEKGQNQANTKRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGKKNSGFYLSELRQSLLLYAWKIWCAGKYLELMDPVLENSCIDSEVVKCIHIGLLCVQEDAADRPTMSTVVVMLASDTMALPKPNQPAFSVGRMALGMNPRDAWVNYWERIFYDEKKKQLDWKLRLNIINGIARGILYLHEDSRLRVIHRDLKASNVLLDHEMNPKISDFGLARAFEKGQNQANTKRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGKKNSGFYLSECGQSLLLYAWKIWSAGKYLELMDPVLETSCIDSEVVKCIHIGLLCVQEDAADRPTMSTVVVMLASDTMALPKPNQPAFSVGRMALGDASTSKSSKNRSINDVTISNILPR | 525 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu2g0305 | 525 | Gene3D | Transferase(Phosphotransferase) domain 1 | 290 | 487 | - | - | |
| Ssu2g0305 | 525 | Gene3D | Transferase(Phosphotransferase) domain 1 | 54 | 264 | - | - | |
| Ssu2g0305 | 525 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 328 | 340 | IPR008271 | GO:0004672|GO:0006468 | |
| Ssu2g0305 | 525 | Pfam | Protein tyrosine and serine/threonine kinase | 74 | 254 | IPR001245 | GO:0004672|GO:0006468 | |
| Ssu2g0305 | 525 | Pfam | Protein tyrosine and serine/threonine kinase | 296 | 477 | IPR001245 | GO:0004672|GO:0006468 | |
| Ssu2g0305 | 525 | SUPERFAMILY | Protein kinase-like (PK-like) | 292 | 505 | IPR011009 | - | |
| Ssu2g0305 | 525 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 71 | 282 | - | - | |
| Ssu2g0305 | 525 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 20 | 70 | - | - | |
| Ssu2g0305 | 525 | ProSiteProfiles | Protein kinase domain profile. | 248 | 493 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Ssu2g0305 | 525 | ProSiteProfiles | Protein kinase domain profile. | 1 | 270 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Ssu2g0305 | 525 | PANTHER | CYSTEINE-RICH RECEPTOR-LIKE KINASE | 292 | 523 | - | - | |
| Ssu2g0305 | 525 | PANTHER | CYSTEINE-RICH RECEPTOR-LIKE KINASE | 20 | 70 | - | - | |
| Ssu2g0305 | 525 | SMART | serkin_6 | 5 | 260 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Ssu2g0305 | 525 | PANTHER | CYSTEINE-RICH RECEPTOR-LIKE KINASE | 71 | 282 | - | - | |
| Ssu2g0305 | 525 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 105 | 117 | IPR008271 | GO:0004672|GO:0006468 | |
| Ssu2g0305 | 525 | SUPERFAMILY | Protein kinase-like (PK-like) | 75 | 255 | IPR011009 | - | |
| Ssu2g0305 | 525 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 292 | 523 | - | - | |
| Ssu2g0305 | 525 | Pfam | Domain of unknown function (DUF3403) | 480 | 525 | IPR021820 | GO:0004674 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu2g0305 | Ssu-Chr2 | 19004690 | 19022613 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu2g0305 | 292 | 525 | Receptor kinase-like Gene Family | AT4G23150 | 58.996 | 9.44e-91 | 290 |
Transcription factors information