Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0298 ATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATCATTAGTGGGAGAAAGAATGGTGGATTCTATCTGTCAGAGCATGGTCAAACTCTTCTTTTATATGCTTGGAACATATGGTGTGCAGGAAAATGTTTGGAATTGATGGATCCAGTACTGGAAAAATCCTTCATGGCCAGTGAAGTTGTGAAGTGCATACACATTGGTCTGTTGTGCGTTCAACAAGATGCAGCAGATAGACCGACCATGTCCACAGTTGTTCTAATGTTAGGAAGTGACACAACGGCCATTCCAAAACCCAACCACCCTGCATTTTCTGTTGGAAGAATGACCTCAAatgaagcatcaacatcaagAAGTTCAAAGAAACTTTCCATTAATGATGTAACAGTCTCTACCATTTTACCAAGGTAA 453 0.3841 MAPEYAMEGLFSVKSDVFSFGVLVLEIISGRKNGGFYLSEHGQTLLLYAWNIWCAGKCLELMDPVLEKSFMASEVVKCIHIGLLCVQQDAADRPTMSTVVLMLGSDTTAIPKPNHPAFSVGRMTSNEASTSRSSKKLSINDVTVSTILPR 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0298 150 Gene3D Transferase(Phosphotransferase) domain 1 1 114 - -
Ssu2g0298 150 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 1 148 - -
Ssu2g0298 150 Pfam Protein tyrosine and serine/threonine kinase 1 101 IPR001245 GO:0004672|GO:0006468
Ssu2g0298 150 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 148 - -
Ssu2g0298 150 Pfam Domain of unknown function (DUF3403) 105 150 IPR021820 GO:0004674
Ssu2g0298 150 SUPERFAMILY Protein kinase-like (PK-like) 1 125 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0298 Ssu-Chr2 18655838 18656377 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0298 1 150 Receptor kinase-like Gene Family AT4G23150 50.641 3.13e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu2g0298 PK_Tyr_Ser-Thr 4.4e-08 CL0016