Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0296 ATGGTGGTAACACAACTAAAGGTGAGATCAATATCCTTTGCTTTCTTGTTATTGCTGAGTTTCAGACCACTCATTACAAAGGCACAATTGACACCCATTTACGTGGGCAGTAACTGCCAAAACACCCCCCAACAGCCTCTCAGCACTGCATTCCAAACAAATCTAGAGAGAATCCTTACATGGGCATCCTCAGATGCAGCCACAAGCGAAGATGATGAGAGAAGAAAGCAATTCGATTGGAAACTAAGATTAAGCATTATTAATGGAATAGCAAGAGGTATTTTATACCTTCATGAGGACTCTCGACTCAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACTATGAGATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAAGAGGACAGAGCCAGGCAAAGACAAAACGAGTAATAGGCACTTATGGATACATGGCTCCTGAGTATGCTATAGAAGGATTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATCATTTGTGGGAGAAAGAATAGGGGATTCTACTTGTCAGAACATGGTCAAACTCTTCTTTTATATGCTTGGAGAATATGGTGTGCAGGAAAGTGTTTGGAATTGATGGATCCAACGCTGGAAAAATCCTTCATAGGCAGTGAAATTGAGAGGTGCATACACATTGGTTTGTTGTGTGTTCAAGAAGATGCAACAGACAGACCAACCATGTCCGATGTTATTGTAATGCTGGCGAGTGACACAATGACCCTTCCAAAACCCAAGTACCCAGCATTTTCAATTGGAAGAATGGCTTCAGAGGAAGTACCTACATCAAAAAGTTCCGAGAATCATTCCATTAATGATGTAACAACCTCTATTACTTTAACCAGGTAA 909 0.3993 MVVTQLKVRSISFAFLLLLSFRPLITKAQLTPIYVGSNCQNTPQQPLSTAFQTNLERILTWASSDAATSEDDERRKQFDWKLRLSIINGIARGILYLHEDSRLRVIHRDLKASNVLLDYEMNPKISDFGLARAFERGQSQAKTKRVIGTYGYMAPEYAIEGLFSVKSDVFSFGVLVLEIICGRKNRGFYLSEHGQTLLLYAWRIWCAGKCLELMDPTLEKSFIGSEIERCIHIGLLCVQEDATDRPTMSDVIVMLASDTMTLPKPKYPAFSIGRMASEEVPTSKSSENHSINDVTTSITLTR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0296 302 Pfam Domain of unknown function (DUF3403) 257 300 IPR021820 GO:0004674
Ssu2g0296 302 Pfam Protein tyrosine and serine/threonine kinase 74 252 IPR001245 GO:0004672|GO:0006468
Ssu2g0296 302 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 71 298 - -
Ssu2g0296 302 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 23 70 - -
Ssu2g0296 302 Gene3D Transferase(Phosphotransferase) domain 1 54 264 - -
Ssu2g0296 302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 105 117 IPR008271 GO:0004672|GO:0006468
Ssu2g0296 302 SUPERFAMILY Protein kinase-like (PK-like) 73 275 IPR011009 -
Ssu2g0296 302 SMART serkin_6 2 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0296 302 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 71 298 - -
Ssu2g0296 302 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 70 - -
Ssu2g0296 302 MobiDBLite consensus disorder prediction 278 302 - -
Ssu2g0296 302 ProSiteProfiles Protein kinase domain profile. 1 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0296 Ssu-Chr2 18513405 18516310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0296 56 291 Receptor kinase-like Gene Family AT4G23150 53.112 2.55e-85 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu2g0296 PK_Tyr_Ser-Thr 1.9e-26 CL0016