Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0294 ATGGAGGGAGCACTACTCAATGTGAGATCAACATATTCCTTTGTTTTCGTGTTAATATTGCTAAGCTTCAAATCACTTGTTACAAAGGCACAACCACCCTTTCATGTGGGAGATGACTGCGATCACACCACCCCAAAACCTCTCAGCAGTGCATACCAAGCCAACGTTAACAGCATCCTCTCGTGGCTATCCTCAGATGCAGCCACAAGCAAAGCTAAACAAGAGGGTGCTCGTAAGTCAAGAAACTTGATCATTGTATTAAGTGTGTTGGGATTAATAGCTTTACTGTCTTTGAGTGTCTACTGCTTATGGTGCAGGAATAGAGTTAGAAAAGATgatgaaaaaagaaagcaaCTTGATTGGAAACTAAGATTAAGCATTATCAACGGAATAGCAAGAGGTCTTTTATACCTTCACGAGGATTCTCGACTCAAGGTAATCCACAGAGATCTTAAAGCTAGCAATGTTCTATTAGACGATGAGATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAAGAGGCCAAAACCAAGCAAATACAAATCGAGTAATGGGCACTTATGGATACATGGCTCCTGAGTATGCCATGGAAGGATTATTTTCAATGAAATCAGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATCATTTGTGGAAAAAAGAATAGTGGATTTTTTCTATCAGAACATGGTCAAAGTCTTCTTTTATATACTTGGAGAATTTGGTGTGCAGGAAAATGTTTGGAATTGATGGACCCAGTGCTAGAAAATTCTTACATAGCCAATGAAGTTGAGAAGTGCATACATATTGGTTTACTATGTGTTCAAGAAGTAGCGGCAGATAGACCAACCATGTCCACTATTGTTGTATGGTTGGCAAGTGACATAACGGCCCTTCCAAGACCTAACAAACCCGCATTCTCAGTTGGAAGAAGGACCACAGAGGAAACATCTACTTCAAAAGGTTCCAAAAGTATTTCCATTAATGAAGTATCAGTCTCTAGTATTCTACCAAGGTAA 1032 0.3876 MEGALLNVRSTYSFVFVLILLSFKSLVTKAQPPFHVGDDCDHTTPKPLSSAYQANVNSILSWLSSDAATSKAKQEGARKSRNLIIVLSVLGLIALLSLSVYCLWCRNRVRKDDEKRKQLDWKLRLSIINGIARGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFERGQNQANTNRVMGTYGYMAPEYAMEGLFSMKSDVFSFGVLVLEIICGKKNSGFFLSEHGQSLLLYTWRIWCAGKCLELMDPVLENSYIANEVEKCIHIGLLCVQEVAADRPTMSTIVVWLASDITALPRPNKPAFSVGRRTTEETSTSKGSKSISINEVSVSSILPR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0294 343 MobiDBLite consensus disorder prediction 311 330 - -
Ssu2g0294 343 Pfam Domain of unknown function (DUF3403) 298 343 IPR021820 GO:0004674
Ssu2g0294 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Ssu2g0294 343 Pfam Protein tyrosine and serine/threonine kinase 115 293 IPR001245 GO:0004672|GO:0006468
Ssu2g0294 343 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 112 340 - -
Ssu2g0294 343 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 21 71 - -
Ssu2g0294 343 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 72 113 - -
Ssu2g0294 343 SMART serkin_6 42 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0294 343 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 112 340 - -
Ssu2g0294 343 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 71 - -
Ssu2g0294 343 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 72 113 - -
Ssu2g0294 343 SUPERFAMILY Protein kinase-like (PK-like) 114 325 IPR011009 -
Ssu2g0294 343 MobiDBLite consensus disorder prediction 314 330 - -
Ssu2g0294 343 Gene3D Transferase(Phosphotransferase) domain 1 107 303 - -
Ssu2g0294 343 ProSiteProfiles Protein kinase domain profile. 1 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0294 Ssu-Chr2 18312142 18317703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0294 70 343 Receptor kinase-like Gene Family AT4G11530 48.639 1.22e-87 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu2g0294 PK_Tyr_Ser-Thr 4.3e-28 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0294 2 18312142 18317703 Ssu2g0294 2 18312142 18317703 ECH