Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0292 ATGTGCAGCATGCAAGTTCTTGCGTCGCAAATGCCAACCCGAGTGTGCATTTGCACCATACTTTCCCCAGACCAGCCTCAAAAGTTTGCAAATGTTCATAGAATTTTTGGGGCAAGCAATGTCACGAAGCTTCTCAACGACTTGCACCCTCACCAACGTGAAGATGCTGTCAATTCCCTTGCTTATGAAGCCGAGATGAGGCTCCGTGACCCTGTCTATGGTTGTGTAGGAGTCATATCGCTCCTACAGCACCAACTTCGCCAGCTTCAAATGGACCTTTGTTGTGCCAAATCAGAGCTCTCTAGGTACCAAAACTTGAGCATCACCACCAACCATGGCCTCATAGCTTCCGAATCTGCGGCCACGgcctaccaccaccaccaaaacACTAGTGGTGGCGGCTTCGGCCGtgaccaccactaccactaccaccaccagtTCTTTCCAAGGGACCAACAAGTGGTGAGAAGCTTTGATGCAGGGAACAACTATGATGCAAGCCTCTTGGCCATGAACATATCTGCCAGCTTAGGGCAACTCAACCAGCTTCAGCATCAGAGTGCTGCTGGCGGGGGCGATGACCGCCACAGTACTGCCAACCGCTCCTAG 609 0.4745 MCSMQVLASQMPTRVCICTILSPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLCCAKSELSRYQNLSITTNHGLIASESAATAYHHHQNTSGGGFGRDHHYHYHHQFFPRDQQVVRSFDAGNNYDASLLAMNISASLGQLNQLQHQSAAGGGDDRHSTANRS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0292 202 ProSiteProfiles LOB domain profile. 1 100 IPR004883 -
Ssu2g0292 202 Pfam Lateral organ boundaries (LOB) domain 16 96 IPR004883 -
Ssu2g0292 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 16 156 - -
Ssu2g0292 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0292 Ssu-Chr2 17905692 17906300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0292 21 198 AS2 family AT1G65620 60.556 2.62e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu2g0292 LOB 7.3e-27 No_clan