Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0277 ATGTTTGGAGAAACCAAGCATATTCTACTGACAAATTTTTCATCAATGGGGAATGGAACGtCTGAAGAAGCAGAGCGGTATTggtttgcttttattttgtaCTCTGTCAAGAAATTGATCCAGAAAAATGAGGAGGGTGGGAAGGAAGAGACTGAGAACACTGGGCTTACCTTGTGTCGTATATTGAGAGCAGCTAAGCTTAACATTgcagatttttttaaagaacttcCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGGCGAAGGAGATGCATGCCAATGCAATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGGCAACTGACACAAATGTTGAAAAGAACTCATCGGTTGCTATACATGCATCTGAATACCATCGATTTGGATGGTTGCTTTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACCAATGGTTTAATTTCAATCTTGGCTATCTTAATTATTCATGTTCCTGCTCGTTTTCGGAATTTCAATATTCATGACTCCTCACGCTTTGTTAAGAAAAGTAACAAAGGTGTGGACCTCCTTGCATCACTCTGCAACATATATAACACTTCTGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAAAGTAATAGCAGatatattgaagaagaagcCCTGCCTGGCGTCTGAATGCGAAACCGAAAACCTAGAGAATATCGATAAAGATGGTTTGACCTATTTTAAAGACTTGATGGAAGAATCGTCTCTACcttctaatttaaatatgttagaaaaagaTTATGATTACATGATTCGCAACAAAAGTGAACTGGATGAGAGGTTATTCATTAATGAGGATGACAGCCTATTAGCTTCAGGAAGCTTGTCTGGAGGTTCTCTTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCAATGGCATCACCTGCAAAGACCATTACAAGTCCACTCTCACCTCACCGCTCCCCCGCATCGCATGCTAATGGCATTTCGGGTAGCACAAACTCAAAGACGGCAGCCACCCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTGCATCGAAGCCATCACCAGAGCTGGAGCGATTTTTGACATCATGTGATAGGGATGTTACAAGTGATGTGGTTCGCAGAGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTCGGAGAACGATGTGTAACTGGAAGTCTGCAAAGTGCAAACCTCATGGACAATATATGGGCAGAGCAACGGAGATTGGAAGCACTGAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAGTACTTCATGCAACTAATTTAACCTCTCTACTTACCAATGAGAGGTTCCATCGGTGTATGCTTGCTTGTTCTGCAGAATTAGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGAATAACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTCCCAAGAGAATTGAGGCGACATTTGAATTCGTTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGGCAGTTGCCAGACCTGCCCTTTCTGCAGAGATGAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCGTTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGGCTGCCGCCTGTGCCTACCATGCCTAAGCTTGAAGGTTCACCAACTCAGAATGGGGATATCAGATCACCAAAGCGAAATGTGTTAATGGAAAGAAATTCTTTCACTTCACCGGTGAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAACTACCCCCACCTCCTTTGCAATCGGCGTTTGCCAGTCCAACAAAGCCAAATCCAGGAGGTGGAGGAGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTCTCTTTTTCAACCGTCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCGCAACTGAACCTAACTTTTAGGGAGATCATATACAACTACAGGAAGCAATCACAATGCAAACCACAAGTTTTTCGTAGCGTATTTGTTGATTGGTCATTGGCACGCCGAAATGGGAGAACAGGACAGGATCATGTTGACATCATTGCCTTTTACAATGAAATATTCATTCCCTGTGTAAAGCCACTGCTGGTTGAACTTGGCCCTGCTGGAACAGCTACAAAAAGTGACCGAATACCtgaagttaataataaaaatgatgGCCATTTAGCTCAATGTCCAGGGTCTCCTAAAATATCACCTTTCCCCAGCCTTCCTGATATGTCTCCAAAAAAAGTGTCTGCCACACACAACGTATATGTCTCTCCATTACGATCATCCAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCGAAAGACCTGACTGCCATCAACAACCGTTTGAATGGCAACCGGAAAGTCAGAGGCCCCCTCAATTTTGATGATGTTGATGGCTTGGTTTGTGACTCCCTGGTTGCAAACAGCCTCTGCCTGCCGAATGGAAGTTGTGCATCATCATCAGGTGCACCATTGAAATCAGAGCAACCTGACTCTTAA 2904 0.4149 MFGETKHILLTNFSSMGNGTSEEAERYWFAFILYSVKKLIQKNEEGGKEETENTGLTLCRILRAAKLNIADFFKELPQFVVKAGPTLSNLYGTDWENRLEAKEMHANAIHLKILSKYYKRVFGEFFVATDTNVEKNSSVAIHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNIHDSSRFVKKSNKGVDLLASLCNIYNTSEDELRKTMEKANKVIADILKKKPCLASECETENLENIDKDGLTYFKDLMEESSLPSNLNMLEKDYDYMIRNKSELDERLFINEDDSLLASGSLSGGSLSAGGVKRKFDSMASPAKTITSPLSPHRSPASHANGISGSTNSKTAATPVSTAMTTAKWLRTVISPLASKPSPELERFLTSCDRDVTSDVVRRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEMNRLGLLAEPMPSLDEIAMHINFSCGGLPPVPTMPKLEGSPTQNGDIRSPKRNVLMERNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQSQCKPQVFRSVFVDWSLARRNGRTGQDHVDIIAFYNEIFIPCVKPLLVELGPAGTATKSDRIPEVNNKNDGHLAQCPGSPKISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDGLVCDSLVANSLCLPNGSCASSSGAPLKSEQPDS 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0277 967 Pfam Retinoblastoma-associated protein B domain 686 813 IPR002719 GO:0005634|GO:0051726
Ssu2g0277 967 SUPERFAMILY Cyclin-like 375 570 IPR036915 -
Ssu2g0277 967 Pfam Retinoblastoma-associated protein A domain 367 568 IPR002720 GO:0005634|GO:0051726
Ssu2g0277 967 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 1 953 IPR028309 GO:0006357|GO:0051726
Ssu2g0277 967 Coils Coil 223 243 - -
Ssu2g0277 967 SMART DUF3452_2 37 185 IPR024599 -
Ssu2g0277 967 SMART RB_A_2 367 568 IPR002720 GO:0005634|GO:0051726
Ssu2g0277 967 Pfam Domain of unknown function (DUF3452) 50 185 IPR024599 -
Ssu2g0277 967 MobiDBLite consensus disorder prediction 339 367 - -
Ssu2g0277 967 SUPERFAMILY Cyclin-like 684 856 IPR036915 -
Ssu2g0277 967 Gene3D - 146 304 - -
Ssu2g0277 967 Gene3D - 648 837 - -
Ssu2g0277 967 PANTHER BNACNNG22930D PROTEIN 1 953 - -
Ssu2g0277 967 Gene3D - 370 558 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Ssu2g0277 RB_A 5.2e-65 CL0065