Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0261 ATGGGGAGTGGAACTACCAGGGTTGTTGGTGTTGAAGATGACAAGGGAGCTGAAAGAGGGATGCCGAGCTTCAATTCTGAGTTACCCGTTTCCAATTCATGCTATACAGAGGGGAGCACAATTGATTCTTTTCGTGTTTCTGACTTTGGAGCATTTGATCAGTCATATCGTGTAGAGGATGCTGTTGAGCTGAGTGGAAACTCAGTTTACAACTCACTAAAAGTAAGTAGCCAAACAATTTCTCCGGGTTCTGTTCACATTAGTAGCCTCGGTCAGTTGCCAACTTCACTTGATAAAAGCCCATTGACAAATCAAACAGAGCCGCATAGGTTGCGATTACAGAGGGTTCAATTGTCAAATCCTGGCACTATATTAGTTGGTAATACAGATAACCAGGAGGAGTCTGCCATGGCTGATGCCAGTCCTAGGCCTGATATTTCTACAGATGTTGACACTGATGACAAGAATCAGCCGTTTGATAGAAATCAAGCCCTTGTTGTTTCTGACTCTAGTGACAGATCGAAAGATACAACAGATCAGaagaCTCTCCGCAGGCTTGCTCAGAACCGTGAAGCTGCAAGAAAAAGCCGtttgagaaagaaaGCCTATGTCCAACAGTTGGAAAGTAGTCGTTTGAAGCTGACCCAACTAGAGCAAGAGCTGCAGCGAGCTAGGCAGCAGGGGATCTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGCAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGGCAAATTAATGAGCTGAGAGCAGCTGTAAATTCTCATGCAAGTGACACTGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGACGAGATTTTTAAGCTGAAAGGTGTTGCAGCTAAGGCTGATGTTTTCCATTTATTGTCTGGTATGTGGAAAACACCTGCTGAGAGGTGTTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTGCTGGTAAGTCAATTGGAACCTCTCACAGAGCAGCAGCTGATGGGTATTATTAACTTGCAGCAATCCTCCCAACAAGCAGAAGATGCGTTGTCTCAAGGCATGGAAGCGTTACAACAGTCCCTTGCGGAGACGTTGTCCACTGGAGCACCTGCCTCATCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTTGAAGGGTTCATTCGACAGGCTGACAATCTTCGCCAGCAGACTCTACAACAAATGCACCGTATACTGACAACTCGCCAATCGGCTCGCGCACTCCTTGCTATACATGACTATTTTTCGCGGTTGCGTGCTCTCAGTTCCCTTTGGTTGGCTCGCCCGAGAGATTAA 1401 0.4575 MGSGTTRVVGVEDDKGAERGMPSFNSELPVSNSCYTEGSTIDSFRVSDFGAFDQSYRVEDAVELSGNSVYNSLKVSSQTISPGSVHISSLGQLPTSLDKSPLTNQTEPHRLRLQRVQLSNPGTILVGNTDNQEESAMADASPRPDISTDVDTDDKNQPFDRNQALVVSDSSDRSKDTTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFKLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVSQLEPLTEQQLMGIINLQQSSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0261 466 MobiDBLite consensus disorder prediction 122 181 - -
Ssu2g0261 466 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Ssu2g0261 466 ProSiteProfiles DOG1 domain profile. 246 463 IPR025422 GO:0006351|GO:0043565
Ssu2g0261 466 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Ssu2g0261 466 Pfam Seed dormancy control 263 339 IPR025422 GO:0006351|GO:0043565
Ssu2g0261 466 MobiDBLite consensus disorder prediction 1 28 - -
Ssu2g0261 466 CDD bZIP_HBP1b-like 181 233 - -
Ssu2g0261 466 Gene3D - 180 231 - -
Ssu2g0261 466 Pfam Basic region leucine zipper 178 223 IPR004827 GO:0003700|GO:0006355
Ssu2g0261 466 SUPERFAMILY Leucine zipper domain 181 224 IPR046347 GO:0003700|GO:0006355
Ssu2g0261 466 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 59 466 - -
Ssu2g0261 466 Coils Coil 257 277 - -
Ssu2g0261 466 MobiDBLite consensus disorder prediction 122 136 - -
Ssu2g0261 466 PANTHER TRANSCRIPTION FACTOR TGA9 59 466 - -
Ssu2g0261 466 SMART brlzneu 177 240 IPR004827 GO:0003700|GO:0006355
Ssu2g0261 466 Coils Coil 200 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0261 Ssu-Chr2 15306633 15324529 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu2g0261 DOG1 1.1e-32 No_clan