Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0217 ATGAACATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCAACCCCTTCTCCACTTCACCCCCAACACCACCAACCCATTTCAGCAGAACACCATGGCAACCTCCCCTTGCCTTCTCCAGCCTCTCTCAGCGTTGGCCTTGGCATCTTCCCTCTCCTAACCGTGCCACACCCCAACGATGTTCACGTTCAGGTTCAAGACTGTGCCAACACCAACAACTACTGGAACCTCAAGATGTGTGGCCCGGAAGTGATTTCAACAAGAAAAGGTGTCGTGAACGTGGAAGATGAGGGGAACAAGCACGCGATGGAGAGTGAGGAAATTGGTGGCGAGTTTAGAGTGTGTCAGGATTGTGGCAATAGGGCCAAGAGAGATTGCGGCTTCAGAAGGTGCAGGACTTGTTGCAAGGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCTCCGCGTCTCAGAGACGCGGCggtggtagtggtagtggtagtggtgatggtaACGGTGACGGCAATGGCAATGGTAGTGCTTCTAAGAGACTAAGACCTTTAGGGTCATCAAAGAATGTTGCTGCCACCTCTCATGGTTCAACTTCCAATGCTACCACAACAAAGAGCTTTAGCTTAGACACAAGCTCTTGTCAACAAGATGCTGGTTTCAAGCAGTCTTTGCCACGCCATGTTCGTGCACCTGCTGTGTTTAGGTGCCATAGAGTGTCTGCTATTGGGAGCGGTGAAGATGAGTTTGCCTACTTGGCCACGGTGCATATTAGTGGCCATGTGTTCAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAAAAATGAAGTGCCTAGTGTTTCAGAACTGCAACTGGGAAACAATGGAAGtggaaagaataataataataataataataatagggaaTGTTCTTCTTCAATTGGGGTTCCAACTAGTGCTTACCCTGCTTCTGTTTGCTGA 963 0.4663 MNMLGLRDLVLIAPTPSPLHPQHHQPISAEHHGNLPLPSPASLSVGLGIFPLLTVPHPNDVHVQVQDCANTNNYWNLKMCGPEVISTRKGVVNVEDEGNKHAMESEEIGGEFRVCQDCGNRAKRDCGFRRCRTCCKGRGFDCSTHVKSTWVSASQRRGGGSGSGSGDGNGDGNGNGSASKRLRPLGSSKNVAATSHGSTSNATTTKSFSLDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEFAYLATVHISGHVFKGFLYDHGADAKNEVPSVSELQLGNNGSGKNNNNNNNNRECSSSIGVPTSAYPASVC 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0217 320 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 320 - -
Ssu2g0217 320 Pfam Domain of unknown function (DUF702) 114 273 - -
Ssu2g0217 320 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 225 271 IPR006511 -
Ssu2g0217 320 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 114 156 IPR006510 -
Ssu2g0217 320 MobiDBLite consensus disorder prediction 153 207 - -
Ssu2g0217 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 320 IPR007818 GO:0003700|GO:0006355
Ssu2g0217 320 MobiDBLite consensus disorder prediction 283 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0217 Ssu-Chr2 12489466 12491050 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ssu2g0217 DUF702 1.9e-51 No_clan