Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0205 ATGGAGGATAATCCTTCCTCAAGTGTTTTAGATGGGACTCTTGTTGGGATCAAATTCGGTATGGCTACACGCCAGGAAATCTGTACAGCTTCCATTAGTGACTCTTCAATTAGTCATGCCAGTCAGCTGTCAAATCCGTTCCTTGGGCTGCCCCTTGAATTTGGTAGATGTGAATCTTGTGGTACTTCTGAAGTAGGAAAATGTGAAGGTCATTTTGGATATATTGAGCTACCAGTTCCCATTTATCATCCTAGTCATATTAGTGAATTGAAACGGATGCTGAGCCTGGTCTGCTTAAACTGCTTAAAAATGAGGAAAACCAAGTTTCCAGCTTCAAGCAGTGGTTTGGCACAGAGATTAATATCTCCTTGTTGTCAGgAGATTAATGCTGCTCTAGTTTCTATTCGGGAGGTTAGAACAAGTGATGGAGCTTGTTATTTGGCGCTGAAGGTATCCAAATCCAAGATGCAGGATGGTTTTTGgagttttttagaaaaatttggCTATCGCTATGAGGGTGATCACACTCGAGCCTTGCTTCCTTGCGAGGCAATGGAAATTCTTAAGAGAATGCCGATGGAGACCAAAAAAAAGCTTGCTGGAAAAGGATATTTTCCTCAAGATGGATATATTTTGAAGTATCTTCCGGTACCACCAAATTGCTTGTCTGTGCCAGTAGTTTCAGATGGCGTCAGTGTCATGTCTTCGGATCCTTCCATGACAATTCTCAGAAAATTGCTCAGGAAGGTTGAAATCATTAAAAGTTCTAGATCAGGTGAACCAAACTTTGAGTCTCATCACGTGGAAGCAAATGATTTGCAGTCAGTGGTTGAtcagtattttcaaattaggggTACTTCTAAGGCAGCACGTGATATAGAAACACGTTTTGGGGTCAATAAAGAGCTTAATGAATCATCAACAAAAGCATGGCTTGAGAAAATGCGGACTTTATTTATAAGAAAGGGTTCCGGTTTTTCCTCCCGGAATGTGATAACTGGAGATTGTTATAAGAGGATAAATGAAGTAGGAATTCCCGTTGAAGTTGCCCAGCGAATAACATTTGAGGAGAGAGTTAACATCCATAACATAAGTTATTTGCAGAAGTTGGTTGATGAAAATTTGTGCCTGACCTACAAGGAAGGTGTGTCAACTTATTCACTTAGGGAGGGCTCAAAGGGGCACATATATCTTAAGCCTGGTCAGATAGTGCATCGGAGGATTATGGATGGGGATATTGTCTTCATTAACAGACCACCTACAACACACAAACACTCTTTGCAAGCACTTTTTGTCTACATCCATGATGACCACACAGTGAAAATAAATCCTCTAATTTGTGGACCACTTGGGGCTGATTTTGATGGTGACTGTGTCCATCTGTTTTATCCACAGTCACTTGCTGCTAAAGCTGAAGTTGTGGAGCTATTTTCTGTGGAGAATCAGCTGCTCAGCTCTCACAGTGGTAATTTGAACCTACAGTTAACCACAGATTCGTTGTTGTCACTGAAGATGTTGGTCAAGAGATGTTTTTTTGATAGAGCGGCGGCTAATCAATTGGCGATGTTTCTTTTGCTACCTTTGCCTCGGCCTGCTTTTCTCAAGGCCAGTTCTGGTGATTCTTATTGGACTCCCATCCAAATGTTACAGTGTGCGTTACCTTTGTGTTTTGATTGCACTGGGGGACGGTACTTGATCAGGCGGAGTGAAATCTTAGAATTTGATTTCAACAGGGATGTTCTGCCTGCAACGATAAATGAAATAGCGGCCTCAATTTTCTTTGGGAAGGGTCCGAAGGAAGCATTAAATTTCTTTGATGTAATGCAGCCCTTTTTGATGGAAAGCTTATTTGCTGATGGGTTTAGTGTTAGCCTACAAGATTTTTCAATATCTAAAGCAATCAAAAGAATTATAAACAGAAGCATTGGAAAAGTTTCTTCTCTGTTGTATCAGCTGAGGTCCATATACAATGAGCTGGTGGCGCAACAACTGGAGAAGCACATTCGTGATGTTGAACttcctattattaattttgctcTAAAGTCAACAAAAATAGGAGATTTAATTGACTCGAAGAGTAAATCAGCTATTGATAAGGTTGTTCAGCAAATTGGGTTCTTAGGGCAGCAACTTTTTGAAAGGGGAAGATTCTATTCCAAAGGATTGGTTGAAGATGTAGGAATCCATTTTCATGTGAAGTGTTGCTATGATGGGGATGGTTATCCCTCTGCTGAGTATGGATTGCTCAAAGGGTGTTTTTTTAATGGTTTGGATCCATATGAAGAGATGGTGCATTCGATTTCAACGAGAGAAATAATCGTGCGTTCTTCGAGAGGATTATCTGAACCAGGAACACTCTTTAAGAATTTGATGGCCATCCTTCGGGATGTTGTGATTTGTTATGATGGAACTGTGAGAAATGTTTGTAGTAATTCCATTATCCAGTTTGAGTATGGGATACAAGCTGGAGAGAAAACTCAGCACTTGTTCCCTGCTGGCGAGCCTGTAGGTGTCTTAGCTGCAACTTCTATGTCAAATCCTGCTTATAAGGCTGTCCTTGATGCTAGTCCTAGTAGCAATTCTTCATGGGAGTTGATGAAGGAAATATTACTATGCAAGGTCAATTTTAGGAATGAACCTGTTGATCGACGTGTAATTTTGTACTTGAATGACTGCGATTGTGGAAGGAATTATTGTCGGGAAAATGCGgcatatttagttaaaaatcaaTTGAGAAAAGTCAGTCTCAAGGATGCAGCAGTTGAGTTCATTATTGAATACCAACAACAACGAACTCACAAGGGAAGTTCTGAGACTGATGCAGGACTTGTTGGTCATGTTTATTTAGATGAGATGATGTTGGAGGAGCTGAAGATCAACATGGCTGACGTTTTCCAAAAATGCCTAGAAAGACTAAATTCGTTTAGTcggaagaagaaaattaatcaaCACTTGAAGAGGACTCGATTATCGTTTAGTGAGTCTTGCTCATCTTCACATCCTGCTGCACCATGTGTAACATTCATTTTGCAAGAGGATCCTGATAGGGATTTAGACACTACTGTAAAGATCTTGTCTGACACAATCTTCCCTGTTCTGTTAGAAACAATAATCCAAGgagATCCACGCATTAGCTCTGCAAGTATAATCTGGGTTAGTCCAGATACAAACACATGGGTCCGAAACCCTTACAAATCTTCTCATGGTGAATTGGCACTTGACATCAGTCTTGAAAAGGAAGCTGTTAAACAGAGTGGCGATGCTTGGAGGATTGTACTTGATTCCTGCCTTCCTGTTCTTCATTTGATTGATACCAGGCGTTCCGTCCCCTATGCTATTAAGCAGATTCAGGAATTAATGGGGATATCATGTACTTTTGATCAAGCGATTCAGCGTCTTGCAGCATCTGTTAAAATGGTGGCGAAAGGTGTTCTTAGAGAGCATCTAATTCTGTTAGCCTGTAGTATGACGTGTGGTGGGAACTTGGTTGGCTTTAATACAGGTGGATATAAGGCCCTGGCACGTCAATTAAATATTCAAGTGCCATTCACAGATGCAACACTCTTTACACCGAAAAAATGTTTTGAGCGAGCTGCGGAGAAATGCCATACTGACTCTTTGTCAAGTATTGTTGCCTCCTGTTCCTGGGGTAAGTGTGTGGCAGTTGGTACAGGATCAAAATTTGAAGTTGTATGGGATGCAAATAAGATAAAATCAAATGAAGTTGAAGGGATGGATGTTTACAATTTTCTTCACATGGTGAAAAGCCTTACCAATGGGGAAGAAGATACAGATGCTTGCTTGGGAGAAGATGTTGATGACTTGCTGGAAGAAGATATGGACTTGGGCATGTCCCCACAGCATACCTCTGGTTTTGAAGCTGTCTTTGAAGAGGATCTTGAACAACCGAATGTTTCAACATCCAATGTTTGGGAAGCAAATACAAAGCAGACTGAATCAAAGACCAATGAGTGGTCAGGTTGGGTAAGTAACAAAACTGAAATAAAAGATAGCAGATCTGAAAGAGCCCAAGAGGATTCTTGGAGGAAAACTGATGTCATCGAAGAGGACTCTTCTAGGTCTAATGCTTGGGATACAAACACAACAGTAGATCagacaaaaacaaaatctaatGAATCTGGCTGGGAAAGGAATAAGTTTGAAATACCAGCTGGTGGATCTGAAAATGTGCAAGATTCTTGGGGCTCAGGCAAGCGGAAGGCTGATGTTACCCAAGAAGACAATTCCAGGTTCGGTGCTTGGGATGCAAATGCAGCAGATCagacaaaaacaaaatctaatGAATCGTCTGGCTGGGGAAGGAATAAGTCTGAAATACCAGATGGTGGATCTGGAAATGTGCAAGAAGATTCTTGGGGCTCAGGTAAGCGGAAGGCTGATGTTACCCAAGAAAACAATTCCAGGTTCGGTGCTTGGGATGCGAATGCAGCAGATCAgacaaaatcaaaatctaatGAATGGTCTGGCTGGGGAAGGAATAAGTCTGAAATACCAGCTGGTGGATCTGAAAATGTGCAAGATTCTTGGGGCTCAGGTAAAAGGAAAGATAATGTTACCCAAAAGGACAATTCTGGGTCTGGTGCTTGGGGTGCAAACACAACAGTAGATCagactaaaacaaaatctaATGAATGGTCTGGCTGGGGAAGGATTAAGTCTGAAATACCAGCTGGTGAATCTGAAAATGTGCAAGATTCTTGGGGTTCAGGTAAATGGAAAGATAATGTTACCCAAAAAGACAATTCTGGGTCTGGTGCTTGGGGTGCAAACAGAACAGTAGATCagacaaaaacaaaatctaCTGAATGGTCTGGCTGGGGAAGGAATAAGTCTGAAATACCAGCTGTTGGATCTGAATATGTGCAAGAAGATTCTTGGGGCGCTGGTAAGAGGAAAGATGATGTTACCCTAGAAGACAATTCTGGGTCTGGTGCTTGGGGTGCAAACAAAGCTGAtcacacaaaaacaaaatctaatGAATGGTCTGGCTGGGGAAGGAATAAGTCTGAAATACCAGCTGTTGGATCTGAAGATGTGCAAGAAGATTCTTGGGGCTCAGGTAAATGGAAAGATGATGTCACCCAAAAAGACAATTCTGGGTCTGGTGCTTGGGGTGCAAACAGAACAGATCAGACAAAAACGAAATCTAATGAATGGTCTGGCTGGGGAAGGAATAAGTCTGAAATACCAGCCGGTGGATCTGAAAATGTGCAAGAAGATTCTTGGGGCTCAGGTAAATGGAAAGATGATGTCACCCAAAAAGACAATTCTGGGTCTGGTGCTTGGGGTGCAAGCAGAACAGGCCAGACAAAAACTGAATTAAATGATAGGTCTGTGTGGGCAAGAGATAAAGTTGAAATAACAGATGGTGGGTCAGAAAAGGCCCAAGAAGATGCTTGGAGCTGTGGTAATTGGAAAGCTGAATCAAAAGTTGTCAATAGTTCTTGGGGAAAACCCAAATCCTCAGAAAGTCAAGCATGGGATTCCCATAATCAGTCAAATCAAACTGCAAGTTCACAGGGATGGGAATCGCATATTGCTTCAGCTAATTCAGACAGTGACAAAGGTTTTCAGTGGGGAAAGCAAGGTAAagaatcatttaagaaaaatcGCTTTGAAGGTTCGCAAGGTCGGGGTTCAAATGCTGGTGACTGGAAAAACAGGAATCGCCCGCCTAGAGCACCTGGACAGAGATTGGACATATACTCATCTGAGGAGCAGGATGTTCTGAAGGATATCGAACCCATTATGCAGTCTATAAGACGAATCATGCAACAGCAGGGGTACAACGATGGGGACCCGCTGCCTGCAGAAGATCAACTTTTTGTACTTGAGAATGTCTTTGAGCACCATCCAGATAAAGAAACCAAAATGGGTGCTGGAATTGATTATGTCATGGTTAACAGACACAGCAGTTTTCAGGAAAGCAGATGCTTTTATGTGGTTTTGAAAGACGGTCGAAGAGAAGACTTTTCATACCGGAAGTGCTTGGATAACTGGATAAGGAAGAAGTATCCAGACCTTGCTGAATCGTTCGTCAGCAAATATTTTCGTAAACCCCGTGGAAGGGGGGACCAGACTGCAACACCAGGGCGCGACGAAGCAGCAACTCCGGGTGACCAGACCTCAACGTCCAGAGGGCGGGCTGGAGCAGCAACTCTGGGCGATCAGACCGCAATGCCCACAGGGCGGGACGAAGCAGCAACTCCTAGTGACCAGACCGCAACGCCTGGCCCTATGGAAACCAATGAGTAG 6276 0.4132 MEDNPSSSVLDGTLVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESCGTSEVGKCEGHFGYIELPVPIYHPSHISELKRMLSLVCLNCLKMRKTKFPASSSGLAQRLISPCCQEINAALVSIREVRTSDGACYLALKVSKSKMQDGFWSFLEKFGYRYEGDHTRALLPCEAMEILKRMPMETKKKLAGKGYFPQDGYILKYLPVPPNCLSVPVVSDGVSVMSSDPSMTILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKAARDIETRFGVNKELNESSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEERVNIHNISYLQKLVDENLCLTYKEGVSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALFVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVENQLLSSHSGNLNLQLTTDSLLSLKMLVKRCFFDRAAANQLAMFLLLPLPRPAFLKASSGDSYWTPIQMLQCALPLCFDCTGGRYLIRRSEILEFDFNRDVLPATINEIAASIFFGKGPKEALNFFDVMQPFLMESLFADGFSVSLQDFSISKAIKRIINRSIGKVSSLLYQLRSIYNELVAQQLEKHIRDVELPIINFALKSTKIGDLIDSKSKSAIDKVVQQIGFLGQQLFERGRFYSKGLVEDVGIHFHVKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQAGEKTQHLFPAGEPVGVLAATSMSNPAYKAVLDASPSSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGRNYCRENAAYLVKNQLRKVSLKDAAVEFIIEYQQQRTHKGSSETDAGLVGHVYLDEMMLEELKINMADVFQKCLERLNSFSRKKKINQHLKRTRLSFSESCSSSHPAAPCVTFILQEDPDRDLDTTVKILSDTIFPVLLETIIQGDPRISSASIIWVSPDTNTWVRNPYKSSHGELALDISLEKEAVKQSGDAWRIVLDSCLPVLHLIDTRRSVPYAIKQIQELMGISCTFDQAIQRLAASVKMVAKGVLREHLILLACSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKCVAVGTGSKFEVVWDANKIKSNEVEGMDVYNFLHMVKSLTNGEEDTDACLGEDVDDLLEEDMDLGMSPQHTSGFEAVFEEDLEQPNVSTSNVWEANTKQTESKTNEWSGWVSNKTEIKDSRSERAQEDSWRKTDVIEEDSSRSNAWDTNTTVDQTKTKSNESGWERNKFEIPAGGSENVQDSWGSGKRKADVTQEDNSRFGAWDANAADQTKTKSNESSGWGRNKSEIPDGGSGNVQEDSWGSGKRKADVTQENNSRFGAWDANAADQTKSKSNEWSGWGRNKSEIPAGGSENVQDSWGSGKRKDNVTQKDNSGSGAWGANTTVDQTKTKSNEWSGWGRIKSEIPAGESENVQDSWGSGKWKDNVTQKDNSGSGAWGANRTVDQTKTKSTEWSGWGRNKSEIPAVGSEYVQEDSWGAGKRKDDVTLEDNSGSGAWGANKADHTKTKSNEWSGWGRNKSEIPAVGSEDVQEDSWGSGKWKDDVTQKDNSGSGAWGANRTDQTKTKSNEWSGWGRNKSEIPAGGSENVQEDSWGSGKWKDDVTQKDNSGSGAWGASRTGQTKTELNDRSVWARDKVEITDGGSEKAQEDAWSCGNWKAESKVVNSSWGKPKSSESQAWDSHNQSNQTASSQGWESHIASANSDSDKGFQWGKQGKESFKKNRFEGSQGRGSNAGDWKNRNRPPRAPGQRLDIYSSEEQDVLKDIEPIMQSIRRIMQQQGYNDGDPLPAEDQLFVLENVFEHHPDKETKMGAGIDYVMVNRHSSFQESRCFYVVLKDGRREDFSYRKCLDNWIRKKYPDLAESFVSKYFRKPRGRGDQTATPGRDEAATPGDQTSTSRGRAGAATLGDQTAMPTGRDEAATPSDQTATPGPMETNE 2091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0205 2091 Pfam RNA polymerase Rpb1, domain 2 325 478 IPR000722 GO:0003677|GO:0003899|GO:0006351
Ssu2g0205 2091 Gene3D RNA polymerase Rpb1, domain 3 487 622 IPR042102 -
Ssu2g0205 2091 SMART rpolaneu7 208 507 IPR006592 GO:0003677|GO:0003899|GO:0006351
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1761 1782 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 2074 2091 - -
Ssu2g0205 2091 Pfam RNA polymerase Rpb1, domain 3 482 627 IPR007066 GO:0003677|GO:0003899|GO:0006351
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1426 1441 - -
Ssu2g0205 2091 Gene3D - 796 820 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 2043 2058 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1792 1811 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 2027 2091 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1335 1359 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1816 1864 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1506 1520 - -
Ssu2g0205 2091 Gene3D - 1914 2010 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1816 1905 - -
Ssu2g0205 2091 Gene3D RNA polymerase II, clamp domain 10 119 IPR044893 -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1528 1554 - -
Ssu2g0205 2091 Gene3D - 322 486 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1703 1730 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1360 1376 - -
Ssu2g0205 2091 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 14 1235 - -
Ssu2g0205 2091 Pfam RNA polymerase Rpb1, domain 5 756 1172 IPR007081 GO:0003677|GO:0003899|GO:0006351
Ssu2g0205 2091 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 195 1381 - -
Ssu2g0205 2091 Gene3D RNA polymerase ii 354 406 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1865 1879 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1566 1614 - -
Ssu2g0205 2091 Pfam RNA polymerase Rpb1, domain 1 43 282 IPR007080 GO:0003677|GO:0003899|GO:0006351
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1335 1785 - -
Ssu2g0205 2091 MobiDBLite consensus disorder prediction 1471 1498 - -
Ssu2g0205 2091 PANTHER DNA-DIRECTED RNA POLYMERASE 195 1381 IPR045867 GO:0003899|GO:0006351
Ssu2g0205 2091 Pfam Protein of unknown function (DUF3223) 1935 2004 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0205 Ssu-Chr2 12055787 12076654 Transposed