Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu2g0202 | ATGGCAGAAGCTGTAATTTTCTTCGTCGCCAACGGAGAACCTCCTTTCTTAACATTCTTCAATCGCACCTTTCTCTCCATCAAGCGACACGTCGCTCACATGATTTTGCGTGAAGTGGATACGGCTGTTGAGAAAAAGTGCGAAGTAAGCGCGGGAGATTGTTCGTCAAACGACAAGAGTTTTGGCACTGATGAGAATGGACGGCACGCCATTTTCAATGCGTTGGATACTATGCTTAAGGACAGTTTAGAGCGGCTGAAGATGATGAGGGAAAACCTAAGTTTGGTAAAGATGGGTCTAACTATGGGATATGCATGTGAATCTAAGTATGCTGAACATACAGCCACTATTAGGCGTTTGTGTTTGGATGGTAAGTTGGGAGCAGCTGTTTGGCTTTGGGAAAAAATGGTGCAGAAAGGTGTTGTTCCTGATGTGTTTACCCACAACCATATTGTAAATGGACTGTGCAAATTTGGTCTTTTGGAGAAGGCAGATTGGGTTGTTAGTGAGATGTTAGAATTTGGTCCTCGTCCCAACTGTGCCACTTATAACACTTTGATTAAGGACTATTGTGCTGTTAATGGTGTGGATAAGGCTTTGTATCTGTTCTCCACCATGGCCAATGCTGGGATTCTGCCAAACAGGGTTACTTGTAACATACTGGTGCATGCGCTGTGTGAGAAAGGTCTTCTGAAGGAAGCTAAAAGGATGCTCGAAGAAATATTAAAGGATGATGACGAAAAAGATATAACTGATTTAGTTACCTCTACTATAATTATGGATAGTTGCTTTAAGAATGGAGCAATTATTCAGGCTCTCAGTCTTTGGAATCAGATGCTTCAAAATTGTACTAAAGTTGATGTTGTAGCTTATAATGTTCTTATCAAAGGATTTTGCAAGAGTCTACAAATGGACCTTGCATATGGATATGCATGTGAGATGTTTAAGAAAGGTTTACTTCCTGATGCTTTTACTTATAACATTCTTATTGGTGCTCTTTGCAAGGAAGGGAAAATTAGTGAGGCTTGCTATACCCTTGGAGTTATGTCTAATATGGGAATTATGCCTGATCGAATTACATACCAGATTGTGATTCGAGGCCTTTGTTTTGACAGAGAGATTGATAGAGCAAAAAACTTGCTTTGGTGTATGTTGAACAATTTAATGATGCCCAAGCCTTTAATATGGAACCTAATAATTGACTTATATGGGAGATGTAACGATCTTAGTAATGCATTTTTCACAAGAGATCAGATGCTAGCTTTTGGTGTTCACCCCAATGTATTTACTTATAATGCTTTAATTCTCACACAAGTGAAGACTGAAAATTTCTATGGTGCTTGCTCTCTGAAGGAAGAGATGATTTCAAAAGGTCTCTGTCCTGATGTGGTTACATATAATTTGTTGATAGGTGCTGCTTGTAATTTAGGACGTCCTGATTTTGCTCTTCAATTACATAATGAGATGGTGCAGATGGGGTATGAACCagatttaataacttatactgAGCTTGTTAGGGGGTTCTGTATTAGAGGTAAGATGAAAGAGGCAGAAGAGCTCTATGCCAAAATACTAAAATCTGGTTTATTGAATGATCATGTTCCAGTTCAGATTCTTTTTAATAAGTACTGCAAATTGGAGGAACCAGTTAGAGCATTTAACTTTTATCAAGACTGGTTGGAAAGTAAAAGGGTTAGTCATCCTTACTAA | 1710 | 0.3854 | MAEAVIFFVANGEPPFLTFFNRTFLSIKRHVAHMILREVDTAVEKKCEVSAGDCSSNDKSFGTDENGRHAIFNALDTMLKDSLERLKMMRENLSLVKMGLTMGYACESKYAEHTATIRRLCLDGKLGAAVWLWEKMVQKGVVPDVFTHNHIVNGLCKFGLLEKADWVVSEMLEFGPRPNCATYNTLIKDYCAVNGVDKALYLFSTMANAGILPNRVTCNILVHALCEKGLLKEAKRMLEEILKDDDEKDITDLVTSTIIMDSCFKNGAIIQALSLWNQMLQNCTKVDVVAYNVLIKGFCKSLQMDLAYGYACEMFKKGLLPDAFTYNILIGALCKEGKISEACYTLGVMSNMGIMPDRITYQIVIRGLCFDREIDRAKNLLWCMLNNLMMPKPLIWNLIIDLYGRCNDLSNAFFTRDQMLAFGVHPNVFTYNALILTQVKTENFYGACSLKEEMISKGLCPDVVTYNLLIGAACNLGRPDFALQLHNEMVQMGYEPDLITYTELVRGFCIRGKMKEAEELYAKILKSGLLNDHVPVQILFNKYCKLEEPVRAFNFYQDWLESKRVSHPY | 569 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu2g0202 | 569 | TIGRFAM | PPR: pentatricopeptide repeat domain | 146 | 180 | IPR002885 | - | |
| Ssu2g0202 | 569 | TIGRFAM | PPR: pentatricopeptide repeat domain | 182 | 214 | IPR002885 | - | |
| Ssu2g0202 | 569 | TIGRFAM | PPR: pentatricopeptide repeat domain | 429 | 463 | IPR002885 | - | |
| Ssu2g0202 | 569 | TIGRFAM | PPR: pentatricopeptide repeat domain | 216 | 244 | IPR002885 | - | |
| Ssu2g0202 | 569 | TIGRFAM | PPR: pentatricopeptide repeat domain | 324 | 357 | IPR002885 | - | |
| Ssu2g0202 | 569 | TIGRFAM | PPR: pentatricopeptide repeat domain | 464 | 497 | IPR002885 | - | |
| Ssu2g0202 | 569 | TIGRFAM | PPR: pentatricopeptide repeat domain | 499 | 529 | IPR002885 | - | |
| Ssu2g0202 | 569 | TIGRFAM | PPR: pentatricopeptide repeat domain | 289 | 323 | IPR002885 | - | |
| Ssu2g0202 | 569 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 144 | 178 | IPR002885 | - | |
| Ssu2g0202 | 569 | SUPERFAMILY | TPR-like | 157 | 561 | IPR011990 | GO:0005515 | |
| Ssu2g0202 | 569 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 31 | 563 | - | - | |
| Ssu2g0202 | 569 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 214 | 248 | IPR002885 | - | |
| Ssu2g0202 | 569 | Pfam | PPR repeat | 395 | 424 | IPR002885 | - | |
| Ssu2g0202 | 569 | Pfam | PPR repeat | 254 | 282 | IPR002885 | - | |
| Ssu2g0202 | 569 | Pfam | PPR repeat | 429 | 459 | IPR002885 | - | |
| Ssu2g0202 | 569 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 462 | 496 | IPR002885 | - | |
| Ssu2g0202 | 569 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 427 | 461 | IPR002885 | - | |
| Ssu2g0202 | 569 | Pfam | PPR repeat family | 461 | 509 | IPR002885 | - | |
| Ssu2g0202 | 569 | Pfam | PPR repeat family | 178 | 226 | IPR002885 | - | |
| Ssu2g0202 | 569 | Pfam | PPR repeat family | 287 | 335 | IPR002885 | - | |
| Ssu2g0202 | 569 | Gene3D | Tetratricopeptide repeat domain | 351 | 440 | IPR011990 | GO:0005515 | |
| Ssu2g0202 | 569 | Gene3D | Tetratricopeptide repeat domain | 173 | 245 | IPR011990 | GO:0005515 | |
| Ssu2g0202 | 569 | Gene3D | Tetratricopeptide repeat domain | 64 | 172 | IPR011990 | GO:0005515 | |
| Ssu2g0202 | 569 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 179 | 213 | IPR002885 | - | |
| Ssu2g0202 | 569 | Pfam | PPR repeat | 139 | 171 | IPR002885 | - | |
| Ssu2g0202 | 569 | Pfam | PPR repeat | 352 | 381 | IPR002885 | - | |
| Ssu2g0202 | 569 | Gene3D | Tetratricopeptide repeat domain | 246 | 350 | IPR011990 | GO:0005515 | |
| Ssu2g0202 | 569 | Gene3D | Tetratricopeptide repeat domain | 441 | 568 | IPR011990 | GO:0005515 | |
| Ssu2g0202 | 569 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 31 | 563 | - | - | |
| Ssu2g0202 | 569 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 287 | 321 | IPR002885 | - | |
| Ssu2g0202 | 569 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 497 | 531 | IPR002885 | - | |
| Ssu2g0202 | 569 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 392 | 426 | IPR002885 | - | |
| Ssu2g0202 | 569 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 322 | 356 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu2g0202 | Ssu-Chr2 | 11741828 | 11745063 | Proximal |