Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0184 ATGACCCTTACTACTGTGGACTCTGCCACTAAGGCCTTAAAATTGCTTGGTCTGGTTGAAGATGAGTTGAGGACTTTTGACGCTCCCGTTGCCTCAGAAATTCATCAGGATGTAGATGTAAACCTGATCATAACAGATTACTGTATGCCAGGAATGACTGGCTATGATCTGCTGAGAAAAATCAAGGAATCTAAATCTCTTAAAGATATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGatgCTTGGAAGAGGGAGCAGAAGAATTCTTTCTGAAACCAGTTAAACAGGCAGATGTAAACAAGCTTAAGCCACATTTGATGAAATCAAGAGCTAAGGAAGAGCAAGACCAACCTTTCAATAACAAAAGGAAGGACATGGAAGAAATCCATTCCCCAAATAAAACCAGATTAAAATGTAGCAGTTAA 444 0.3919 MTLTTVDSATKALKLLGLVEDELRTFDAPVASEIHQDVDVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVKQADVNKLKPHLMKSRAKEEQDQPFNNKRKDMEEIHSPNKTRLKCSS 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0184 147 ProSiteProfiles Response regulatory domain profile. 1 113 IPR001789 GO:0000160
Ssu2g0184 147 MobiDBLite consensus disorder prediction 111 147 - -
Ssu2g0184 147 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 143 IPR045279 GO:0009736
Ssu2g0184 147 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 3 143 - -
Ssu2g0184 147 MobiDBLite consensus disorder prediction 111 140 - -
Ssu2g0184 147 SUPERFAMILY CheY-like 26 114 IPR011006 -
Ssu2g0184 147 SMART REC_2 1 112 IPR001789 GO:0000160
Ssu2g0184 147 Gene3D - 1 143 - -
Ssu2g0184 147 Pfam Response regulator receiver domain 27 105 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0184 Ssu-Chr2 10880864 10882464 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu2g0184 Response_reg 2.8e-16 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0184 2 10880864 10882464 Ssu8g1644 8 37565616 37569404 PCT