Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0176 ATGGAGTCTCTGGTTCTTCAACTCCATGAAATCTCAGCTGTCAAATTTGgcaatttcaagctcaaatctGGCATCTCCTCACCAATCTACATAGACTTGCGCCTTGGTATATCTTACCCTTCCGTCCTACGGAATATTTCTCAAACCCTTATTTCCTCTGTCTCTTCCACTTCATTTGACCTTGTCTGTGGTGTTCCTTACACTGCTCTGCCCATTGCCACTTGTGTCTCTGTTACTCAGAACATCCCCATGGTCATGCGCCGCAAGGAAATCAAAGATTATGGAACTTCTAAAGCCATTGAAGGTGATTTCAAGCATGGCCAAAGTTGCTTGATAATTGAGGATCTAGTTACTAGTGGAACATCAGTTTTGGAAACTGCTGCACCATTGCGTGCTGCAGGGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGATAGAGAGCAAGGTGGGAGAGAGAATTTGGAGAGTAATGGAATCAAGCTGCATGCTATTCTTAAATTGACtgaaatggtgaaaattttgagggaaaaaGGAAAGCTTGATGAGCAGATGCTAGGGGTTGTTATGAGATTCTTAGAAGAGAATCAGAAGGTTGGTGCTTTGGCAACTACAGCTAAGGTCAAGGCCTTGTCATTTTTGGAGAGGGCTAAGTTGTCCAAAAATCCAACAGGAAAGAGGTTGTTTGAGATAATGACTGAGAAGGAGAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCTGACAAGGTTGGGCCTGAGATATGCTTGCTGAAAACTCATGTGGATATTTTTCCAGATTTTACTCCAGATTTCGGTTCTAAGCTGCAATCAATTGCAGAAAAACATAACTTCTTAATCTTTGAGGATCGTAAATTTGCTGACATTGGTAACACAGTGACCATGCAGTATGAAGGAGGGATCTTTCGTATATTGGATTGGGCTGATATAGTAAATGCTCACATTATATCTGGTCCTGGAATTGTGGAAGGACTGAAGTTGAAGGGTTTGCCTCGTGGAAGGGGTCTACTGCTGCTTGCTGAAATGAGTTCAACTGGTAACCTTGCCAAGGGAGATTACACCACTGCTGCGGTGAAAATCGCTGAGGATCATTCTGACTTTGTTATTGGCTTCATCTCACTCAGTCCAGCATCATGGCCTGGGGCACCCATAAATCCCTCTTTCAGTCATGCAACTCCTGGAGTTCAAATGGTCACTGGTGGTGATGCTTTAGGGCAGCAATATAACACACCATATTCTGTTGTCCATGATAGGGGTAGTGACATTATCATAGTGGGTCGTGGCATCATCAAGGCAGCAAATCCGTCTCAGGCAGCTCGCGAATACCGTCTTCAAGGATGGAGTGCATATTTGGCCAAGTGCAGTTGA 1407 0.4257 MESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLGISYPSVLRNISQTLISSVSSTSFDLVCGVPYTALPIATCVSVTQNIPMVMRRKEIKDYGTSKAIEGDFKHGQSCLIIEDLVTSGTSVLETAAPLRAAGLKVSDAVVLIDREQGGRENLESNGIKLHAILKLTEMVKILREKGKLDEQMLGVVMRFLEENQKVGALATTAKVKALSFLERAKLSKNPTGKRLFEIMTEKESNLCLAADVGTAAELLEIADKVGPEICLLKTHVDIFPDFTPDFGSKLQSIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFRILDWADIVNAHIISGPGIVEGLKLKGLPRGRGLLLLAEMSSTGNLAKGDYTTAAVKIAEDHSDFVIGFISLSPASWPGAPINPSFSHATPGVQMVTGGDALGQQYNTPYSVVHDRGSDIIIVGRGIIKAANPSQAAREYRLQGWSAYLAKCS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0176 468 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 1 468 - -
Ssu2g0176 468 PANTHER PHOSPHORIBOSYLTRANSFERASE, OROTIDINE 5-PHOSPHATE DECARBOXYLASE 1 468 - -
Ssu2g0176 468 SMART OMPdecase_2 237 455 IPR001754 GO:0004590|GO:0006207
Ssu2g0176 468 SUPERFAMILY PRTase-like 3 189 IPR029057 -
Ssu2g0176 468 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 236 455 IPR001754 GO:0004590|GO:0006207
Ssu2g0176 468 TIGRFAM pyrF: orotidine 5'-phosphate decarboxylase 238 456 IPR014732 GO:0004590|GO:0044205
Ssu2g0176 468 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 293 306 IPR018089 GO:0004590|GO:0006207
Ssu2g0176 468 Gene3D Aldolase class I 207 468 IPR013785 -
Ssu2g0176 468 Pfam Phosphoribosyl transferase domain 51 152 IPR000836 -
Ssu2g0176 468 SUPERFAMILY Ribulose-phoshate binding barrel 210 464 IPR011060 -
Ssu2g0176 468 CDD PRTases_typeI 59 166 IPR000836 -
Ssu2g0176 468 CDD OMP_decarboxylase_like 238 455 - -
Ssu2g0176 468 Gene3D - 1 206 IPR029057 -
Ssu2g0176 468 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 224 IPR023031 GO:0004588|GO:0006221
Ssu2g0176 468 TIGRFAM pyrE: orotate phosphoribosyltransferase 8 169 IPR004467 GO:0004588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0176 Ssu-Chr2 10267510 10270369 Dispersed/Wgd