Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0175 ATGGCAGCaagtaatatattctttaatgaTATACGGACCAAAGCCGATGTTGATCCTCCTCAAAATGAAGAGTCGACAGATGTTGGTGAATTAGTAAATGATCCTGCACAAACTGCTCTTAAACCTAATGGAACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCTGGTTGTAAACCCAGGGTCCATAACCGGTGTCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCATCATTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATTGGTATCTATCCATATTACAACAAGCTAAAACATGAATCGCAATGTGCATATAGACCTTACAACTGTCCATATGCTGGTTCAGAATGCTCTATTATGGGTGATATACCCTATCTGGTGGCCCATCTGAAAGATGACCACAAAGTGGACATGCACAATGGTAGTACTTTTAACCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCTACATGGATGTTGACGGTCTTCAGCTGCTTCGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATAATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAAGGGGTGCCTAGAAGCATCAGAGACAGCCACCGCAAGGTTCGTGACAGCTTTGATGGTCTCATTATTCAGAGGAATATGGCTCTCCTTTTTTCCGGGGGTGACCGGAAGGAATTGAAGCTACGGGTTACTGGTAGGATTTGGAAGGAACAGTGA 915 0.4306 MAASNIFFNDIRTKADVDPPQNEESTDVGELVNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYNKLKHESQCAYRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALLFSGGDRKELKLRVTGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0175 304 CDD RING-HC_SIAHs 54 92 - -
Ssu2g0175 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Ssu2g0175 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 108 IPR013083 -
Ssu2g0175 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Ssu2g0175 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 14 304 - -
Ssu2g0175 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 14 304 - -
Ssu2g0175 304 SUPERFAMILY RING/U-box 48 96 - -
Ssu2g0175 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Ssu2g0175 304 SUPERFAMILY TRAF domain-like 109 301 - -
Ssu2g0175 304 CDD Sina 170 298 - -
Ssu2g0175 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Ssu2g0175 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0175 Ssu-Chr2 10264254 10266062 Dispersed/Wgd