Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0059 ATGTCTGTAAGGCTCAGCAGGCTGATTATTTGGCTCTTCGATATCACCAATGACTTCTATAAAAGCCATCACTTCTCTACTGATCTTTCAACCCCAAAAAGGCATATTTTCAAGCTGGATGCTCTTTCTCGGGAGATATTAGGGATTGCATTCCCCTCAGCACTGGCTGTTGCTGCTGATCCCATTGCTTCTCTGATAGACACAGCATTCATAGGCCACTTGGGACCCGTGGAACTTGCTGCTGCAGGAGTTTCCATTGCCTTGTTCAACCAAGCTTCAAGGATTACCATATTCCCTCTGGTCAGCATTACCACTTCCTTTGTGGCTGAGGAAGATACTATTGAAAAGCTGAATATCAAAGCAGCCGAAAATGGTAATAAGTCTAAGTTCAGCGAAGCTATTGTGCCAGAGGGTCATATGCTTCAAGACATAGAAAAAGGTACCCCCAAAGAGAATGTTGAAGCTCCACCAGAATCTatggaagaaaaagatgaatCAAACGATCTCGTAGTGAAAAGTTGTGCACCAGAGGATGTGGAAAATAATACTACTGGGAACAATGACACAAAATTTGGAGATGatGCCAATACAAATATATGCAAGCCTTCATCTGTTACTAGTAATTATAAGAGTAAGCAGAAAGTTGGAAAGAAGAAGCGACATATTGCTTCAGCATCAACAGCACTACTTTTTGGCACAATCCTTGGCCTCGTTCAAGCTGCAGTGCTTATTTTTGCAGCCAAACCTCTGTTATATGTTATGGGTCTGAAAAGAGATTCGCCTATGTTAAACCCAGCAGAGAAGTACTTGAAATTGAGATCGTTCGGGGCACCTGCAGTGCTTCTCTCCTTGGCAATGCAAGGAATCTTCCGAGGGTTCAAGGATACAACAACTCCTTTATATGTCATTGTTTCGGGATATGCATTGAATGTCGTATTGGAcccaatatttattttcatattgaaattaGGCATCAGAGGTGCAGCCATTGCACATGTTCTCTCCCAGTACATGATGGCATTCACTCTCTTAttgatattaatgaaaaaagtgCATCTCCTACCTCCAAGCATAAAGGATTTGCAGATTTTCCGATTTCTTAAAAATGGAGGTTTGTTGATGCTAAGGGTAGTTGCAGTGACATTTTGTGTGACCTTGGCAGCATCATTGGCAGCAAGGCTAGGTACAATTCCTATGGCTGCATTTCAAACATGTCTACAGGTCTGGTTGACATCGTCCCTTCTTGCAGATGGTTTGGCTGTTGCTGTTCAGGCAATTCTAGCTTGTTCTTTTGCTGAGAAAGACCATAAGAAAACAACAGCTGCTGCAACAAGGACACTGCAAATGAGTTTTGTTTTAGGAGTGGGGCTCTCTTTTGCTGTTGGACTTGGATTATACTTTGGAGCTGGAATATTTTCCAAAAACGTTCATGTTGTGCACTTAATTAAAATAGGCATCCcgTTTGTAGCTGCTACTCAACCAATCAATTCATTGGCCTTCGTATTTGATGGGGTGAACTATGGAGCTTCAGATTTTGCATATTCAGCATACTCTCTGGCAAGTCCTGGTGTCACTTGTAAGTGTAGCTATAGAATTCCTTCTCTATAG 1608 0.4073 MSVRLSRLIIWLFDITNDFYKSHHFSTDLSTPKRHIFKLDALSREILGIAFPSALAVAADPIASLIDTAFIGHLGPVELAAAGVSIALFNQASRITIFPLVSITTSFVAEEDTIEKLNIKAAENGNKSKFSEAIVPEGHMLQDIEKGTPKENVEAPPESMEEKDESNDLVVKSCAPEDVENNTTGNNDTKFGDDANTNICKPSSVTSNYKSKQKVGKKKRHIASASTALLFGTILGLVQAAVLIFAAKPLLYVMGLKRDSPMLNPAEKYLKLRSFGAPAVLLSLAMQGIFRGFKDTTTPLYVIVSGYALNVVLDPIFIFILKLGIRGAAIAHVLSQYMMAFTLLLILMKKVHLLPPSIKDLQIFRFLKNGGLLMLRVVAVTFCVTLAASLAARLGTIPMAAFQTCLQVWLTSSLLADGLAVAVQAILACSFAEKDHKKTTAAATRTLQMSFVLGVGLSFAVGLGLYFGAGIFSKNVHVVHLIKIGIPFVAATQPINSLAFVFDGVNYGASDFAYSAYSLASPGVTCKCSYRIPSL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0059 535 CDD MATE_DinF_like 44 521 IPR044644 -
Ssu2g0059 535 Pfam MatE 216 316 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu2g0059 535 Pfam MatE 374 519 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu2g0059 535 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 34 520 IPR044644 -
Ssu2g0059 535 PANTHER PROTEIN DETOXIFICATION 34 520 - -
Ssu2g0059 535 MobiDBLite consensus disorder prediction 145 168 - -
Ssu2g0059 535 TIGRFAM matE: MATE efflux family protein 52 519 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0059 Ssu-Chr2 5352661 5358584 Tandem