Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0058 ATGACCACTAATGTCATTGTCGTAGCCATCACCATCCCCACCACCATCGCCCCCACCCACCACCATCGTCGCCACTACCACACCGCcatcattaccaccaccaccgccgccACACCCTCACTACCACAGCCATATGGTgcaacgatggtggtggtggcgatggtggtaggggtggcgacagtggtggtgatggaggtggtgatggtggtagggGTGACATTGACAACGATGAGGACAGTGGTGGGGTGtggcgacagtggtggtggcgtTGGTGTTGGCGATGATGGTGGGGGTGAtgatggtggcggtggtggcaGAGGACGGTGTTCCCACGAACCTGTCAACAAGCGGGAAACTCCattctttgttttcttcaaaGATGCAAGATTTGTTTTCAAGTTGGATGCCCTTTCTCGAGAGATATTAGGGATTGCATTCCCCGCTGCACTAGCTGTTGTTGCTGATCCCATTGCTTCTTTGATAGACACAACATTCATAGGCCACTTGGGACCGGTAGAACTTGCTGCTGCAGGAGTTTCCATTGCTTTATTCAACCAAGCTTCAAGGATTACCATATTCCCTCTAGTTAGTATTACAACATCGTTTGTGGCTGAGGAAGATACCATTCAAAAGCTGACTAGCAAAGAAAGTCAAAATGATAATGCTAAGTTCAGCCAAGTAATTTTGTCTGATCAGGATCATATGCCTCGAGACATAGAAAAGGACACACCCAAAGAAAATATGGAGCCTCCAAAAGAATCCATGCAAGAAACCGATGAATCAAACGACGTCGTAGCGAAGATTGGAAAGAAGCGCATTGCCTCAGCATCAACAGCGCTACTTTTTGGCACAATCCTTGGACTCCTTCAAGCTGCAATCCTCACATTTGCAGCCAAACCTCTTTTATATGCGATGGGTCTAAAACATgATTCTCCTATGCTAAATCCAGCAGAAAAGTACTTAAGATTGAGATCGATTGGGTCTCCTGCTGTTCTTCTCTCCTTGGCCATGCAAGGAATCTTTCGAGGGTTCAAGGACACAACAACTCCTTTATATGTCATTGTTTCGGGATACGCATTCAATGTCCTATTGGACccaatacttattttttatttgaaattgggCCTCAAAGGTGCGGCCATGGCTCATGTTATCTCCCAGTATATGATGGCAATCACCCTCTTCTTTTTGCTGATAAAAAGAGTACATCTCCTACCTCCAAGCATAAAGGATTTGCAGATTTTCCGAtttcttaaaaatgGAGGCCTATTGTTGACAAGGGTAGTATCAGTGACATTTTGTATGACCTTAGCAGCATCATTGGCAGCAAGGCTAGGTTCAATTACTATGGCTGCATTTCAACCAGGCCTACAAATTTGGTTAGCATCATCCCTTCTTGCTGATGGTTTGGCTGTGGCAGTACAGACAATTCTAGCTTGTTCTTTTGCTGAGAAAGACCATAACAAGGCTACTGCTGCTGCTACACGGACACTACAAATGAGTTTTGTTTTAGGAGTGGGGCTTTCTCTTGTGGTTGCGGTTGGATTATACTTTGGTGCTGGAATGTTTTCCAAAAATGCTAATGTTGTGCACTTAATCAAAATAAGCATGCCGTTTGTTGCAGCTACTCAACCAATTAATTCATTAGCCTTCGTCTTTGATGGTGTCAACTATGGGGCATCCGATTTTGCATATTCTGCCTATTCTTTGGCAaGTTTTGGTGTCATTAGTAAGCATTCCTATAGAAATACTTCTCTTCAGGAGCAAACAATTCGTTGGAATATGGATTTCACTAACCATATATATGATTCTTCGTATGTTAGTTGGTATATGGAGGATGGGAACAAGGACAGGACCATGGTTCCGCTTCCTATTATCAGTATGTAA 1887 0.3916 MTTNVIVVAITIPTTIAPTHHHRRHYHTAIITTTTAATPSLPQPYGATMVVVAMVVGVATVVVMEVVMVVGVTLTTMRTVVGCGDSGGGVGVGDDGGGDDGGGGGRGRCSHEPVNKRETPFFVFFKDARFVFKLDALSREILGIAFPAALAVVADPIASLIDTTFIGHLGPVELAAAGVSIALFNQASRITIFPLVSITTSFVAEEDTIQKLTSKESQNDNAKFSQVILSDQDHMPRDIEKDTPKENMEPPKESMQETDESNDVVAKIGKKRIASASTALLFGTILGLLQAAILTFAAKPLLYAMGLKHDSPMLNPAEKYLRLRSIGSPAVLLSLAMQGIFRGFKDTTTPLYVIVSGYAFNVLLDPILIFYLKLGLKGAAMAHVISQYMMAITLFFLLIKRVHLLPPSIKDLQIFRFLKNGGLLLTRVVSVTFCMTLAASLAARLGSITMAAFQPGLQIWLASSLLADGLAVAVQTILACSFAEKDHNKATAAATRTLQMSFVLGVGLSLVVAVGLYFGAGMFSKNANVVHLIKISMPFVAATQPINSLAFVFDGVNYGASDFAYSAYSLASFGVISKHSYRNTSLQEQTIRWNMDFTNHIYDSSYVSWYMEDGNKDRTMVPLPIISM 628
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0058 628 PANTHER PROTEIN DETOXIFICATION 114 577 - -
Ssu2g0058 628 CDD MATE_DinF_like 139 576 IPR044644 -
Ssu2g0058 628 Pfam MatE 429 571 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu2g0058 628 Pfam MatE 275 367 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu2g0058 628 MobiDBLite consensus disorder prediction 235 260 - -
Ssu2g0058 628 MobiDBLite consensus disorder prediction 91 112 - -
Ssu2g0058 628 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 114 577 IPR044644 -
Ssu2g0058 628 TIGRFAM matE: MATE efflux family protein 147 570 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu2g0058 Ssu-Chr2 5294494 5309745 Dispersed/Wgd
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0058 2 5294494 5309745 Ssu8g1637 8 37225872 37230179 PCT