Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0056 atgaaaacgCTAACTGTTATAACCGAAGATTCTTTTTCCAGTTTGCTGGAACTTGCTTCTAACAATGACATTGAAGGTTTCAAGTTGCTTTTGGATAAGGATTCTTCTTCGATCAATGAAGTTGGGCTCTGGTATGGCCGGCAAAACGGATCAAAGCAGATTGTTCTTGAGCATAGAACCCCTTTGATGGTTGCTGCTACTTATGGGAGCATTGATGTTCTGAAGCTTATTCTGTTGTGCCCGGAGATGGAGGTGAATTTCGCGTGTGGGGCGTATAAAAGCACTGCCCTTCACTGTGCTGCTTCTGGTGGATCAGCCAATGCAGTTGATGCTGTGAAGCTTCTTTTATCGGCCGGCGCCGATGTGAACTGCGTGGATGCCAATGGGAATCGCCCTATTGATGTAATTGTTGTTCCTCCCAAGCTGCAAGGCATGAAGGCCATTCTTGAGGAACTTCTTTCGGACAGCAGCGCTTCTGATGGGTCTGTTGGTGAATTCTCTGTTCCGGTGTCTCTGAATTCTTCCAGTTCTGGCTCTCCTGCCCATTCATCAAATGGGATGCCGTACTCTCCTTCAGGCTCACCGCCATCTCCAGTGGCTTCAAAGTTTACTGATGCGGCTATTGGCTCTTTGTCAGAGAAGAAAGAATATCCCATTGATCCATCGCTGCCTGATATAAAGAATAGCATATATGCGACCGATGAGTTTCGGATGTTTTCGTTCAAGGTGAGGCCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCATTTGTTCATCCTGGAGAGAATGCCCGAAGGAGAGACCCCAGGAAGTTCCATTACAGCTGCGTGCCATGCCCTGATTTTAGAAAGGGGGCTTGTAGGCGCGGAGACATGTGTGAATATGCTCATGGGGTGTTTGAGTGCTGGCTGCACCCGGCTCAGTACAGGACACGCCTCTGCAAAGATGGCACTAGTTGCAATAGAAGGGTGTGTTTTTTTGCTCACACTGCAGAGGAGCTGCGTCCGTTGTATGTGTCCACCGGATCTGCTGTCCCTTCGCCCCGATCATCTGGCTCGGCTCCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTTTGCCAGGCTCACCTTCATCGGTCTCTTCCATGTCGCCATCCCATTTTGGCCAACCAGTGTCCCCATCTGCAAATAGCATGTCACTCTCATCTGCTACTTGGGCACAGCCAAATGTGCCAGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGTCGATTGAGGTCTTCTCTCAATGCACGTGACATTCCACTGGAAGACTTGAATGCGATGGCTGATCTTGATAGCCACCAGCAGCACCCTTTGATTGACTTGAGCTGTTTCTTACAGCCTCGCCCTGGTGTTGGTTCAGTAAGTCGATCTGGTCGGTCCAAGACCCTAACTCCATCAAATTTGGAAGAGCTTTTCTCTGCTGAGATTTCTTCGTCTCCCCGGTACTCTGATCCAGCAGCGGCATGTGTTTTTTCCCCTACCCACAAATCAGCTGTTCTCAATCAGTTTCAACAGCTCCAAAGTATGTTATCGCCTATAAATACTAATTTGCTATCTCCTAAGAATGTTGAACATCCTCTTTTACAGGCTTCCTTTGGTGTCTCTCCTTCTGGAAGGATGTCACCAAGAAGTGTTGAACCAATCTCTCCAATGAGCACTCGCCTATCCACATTTGCTCAGCGTGAGaaacagcagcagcagcagctgCGCAGTATCAGTTCAAGGGACCTTGGTGCCAACAGTCCTGCCTCAGTTGTTGGCTCCCCTGTAAACGCTTGGTCAAAGTGGGGATCTCCCAACGGGAAAGTTGATTGGTCAGTAAATGGAGATGAGTTTGGTTGTCAGATGCGAAGATCATCCTCGTTTGAGTTGAAGAACAACGGGGAAGAGCCTGATCTATCTTGGGTCCAATCTCTGGTCAAGGAATCCCCACCTGAGATGATAATCAAAGAGAAGTTTGCAACTCCTGGGCCTACTGCATCTGCTGATGGACTGAATTCCAATTCCCAAATTGAACCCGTTGATCACTCTGTTTTAGGAGCTTGGCTTGATCAAATGCAACTGGACCAGCTTGTAGTCTAG 2118 0.4769 MKTLTVITEDSFSSLLELASNNDIEGFKLLLDKDSSSINEVGLWYGRQNGSKQIVLEHRTPLMVAATYGSIDVLKLILLCPEMEVNFACGAYKSTALHCAASGGSANAVDAVKLLLSAGADVNCVDANGNRPIDVIVVPPKLQGMKAILEELLSDSSASDGSVGEFSVPVSLNSSSSGSPAHSSNGMPYSPSGSPPSPVASKFTDAAIGSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSGSAPNVMDMAAAMSLLPGSPSSVSSMSPSHFGQPVSPSANSMSLSSATWAQPNVPALHLPGSNLQSSRLRSSLNARDIPLEDLNAMADLDSHQQHPLIDLSCFLQPRPGVGSVSRSGRSKTLTPSNLEELFSAEISSSPRYSDPAAACVFSPTHKSAVLNQFQQLQSMLSPINTNLLSPKNVEHPLLQASFGVSPSGRMSPRSVEPISPMSTRLSTFAQREKQQQQQLRSISSRDLGANSPASVVGSPVNAWSKWGSPNGKVDWSVNGDEFGCQMRRSSSFELKNNGEEPDLSWVQSLVKESPPEMIIKEKFATPGPTASADGLNSNSQIEPVDHSVLGAWLDQMQLDQLVV 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0056 705 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 703 - -
Ssu2g0056 705 MobiDBLite consensus disorder prediction 174 201 - -
Ssu2g0056 705 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Ssu2g0056 705 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Ssu2g0056 705 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Ssu2g0056 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 300 IPR000571 GO:0046872
Ssu2g0056 705 Gene3D - 275 338 - -
Ssu2g0056 705 ProSiteProfiles Zinc finger C3H1-type profile. 280 302 IPR000571 GO:0046872
Ssu2g0056 705 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Ssu2g0056 705 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
Ssu2g0056 705 PANTHER UNKEMPT FAMILY MEMBER 1 703 IPR045234 -
Ssu2g0056 705 SMART ANK_2a 57 87 IPR002110 GO:0005515
Ssu2g0056 705 SMART ANK_2a 92 124 IPR002110 GO:0005515
Ssu2g0056 705 SMART ANK_2a 10 40 IPR002110 GO:0005515
Ssu2g0056 705 MobiDBLite consensus disorder prediction 174 190 - -
Ssu2g0056 705 SMART c3hfinal6 275 301 IPR000571 GO:0046872
Ssu2g0056 705 SMART c3hfinal6 310 333 IPR000571 GO:0046872
Ssu2g0056 705 SUPERFAMILY Ankyrin repeat 8 149 IPR036770 -
Ssu2g0056 705 MobiDBLite consensus disorder prediction 573 596 - -
Ssu2g0056 705 Gene3D - 2 162 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0056 Ssu-Chr2 5255958 5258075 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu2g0056 Ank_2 6.3e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0056 2 5255958 5258075 Ssu8g1638 8 37266941 37269112 PCT