Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0053 ATGGAGTCAGAAGGGGAAGCTGGGGCAAAGCCAGTGACAGCATTGGGTGCCCAAGTGTGCCAGATTTGTGGTGAAAGTGTTGGGAAGAGTGTGGATGGTGAACCGTTCATTGCGTGCGATGTTTGTGCTTTCCCTGTCTGCAGGCCTTGCTATGAGTATGAAAGGAAGGATGGGAATCAGTCTTGTCCCCAGTGCAAAACTCAGTACAAGAGGCACAAAGGAAGTCCTGCAATTCTTGGAGACAGGGAAGAGGATGATGCTGCTGCTGATGGTGCCATCGACTTCAATTATGATTCagaaaatcaaaaccaaaagcAGAAGATTGCAGAGCGCATGTTGAGCTGGCAATTGACATATGCACGAGGAGAGGAGGTTGGTGCTCCAAATTATGATAAGGAAGTTTCTCACAATCACATTCCTCTGCTGACCAGTGGACAAGAGGTATCTGGCGAGTTGTCTGCAGCCTCACCTGAGAGGCTCTCAATGGCATCTCCTGCAATTGGTGGCGGAAAGCGTGTCCATACATATTCGTCTGATGTTAATCAATCTCCAAATATTAGGGTTGGGGATCCAGGATTAGGCAATGTTGCATGGAAAGAAAGAGTTGATGGCTGGAAGATGAAGCAAGAAAAGAACGTTGTTCCAATGAGCACAGGCCAGGCTGCTTCTGAAAGAGGAGCTGGAGATATTGATGCTAGTACTGATGTGCTTGTGGATGACTCCTTGTTGAATGATGAAGCTCGACAGCCTCTTTCCAGGAAGGTTTCTATTCCATCATCTAGGATAAATCCATATCGTATGGTCATTATGCTGCGGCTGGCTATCCTTTGCATTTTCTTGCATTATCGGATAACAAATCCAGTAGCCAATGCATATGCATTGTGGTTGGTATCAGTTATATGTGAGATTTGGTTTGCCATATCTTGGATATTGGATCAATTCCCCAAGTGGCTTCCTGTAAACCGTGAAACATATCTCGACAGGCTTGCACTGAGGTACGATCGGGAAGGAGAACCGTCACAACTAGCTGCTGTTGACATTTTTGTCAGTACTGTTGACCCATTAAAGGAGCCCCCACTTGTGACTGCCAATACCGTACTATCTATTCTTGCAGTTGACTACCCAGTGGATAAGGTCTCCTGCTATGTGTCTGATGATGGTGCTGCTATGTTGACATTTGAAGCACTTGCTGAGACATCAGAATTTGCGAGGAAATGGGTTCCTTTTAGCAAGAAGTATAGCATTGAACCCCGTGCACCTGAGTGGTACTTTGCACAAAAGATTGACTACTTGAAAGATAAGGTTCATCCATCATTTGTCAAGGATCGTAGAGCAATGAAGGTGTTCTTGGGCCAAAGTGGAGGACTTGACACTGAGGGTAATGAACTTCCACGTCTAGTCTATGTTTCTCGTGAGAAGCGTCCAGGGTTCCAACATCACAAGAAAGCTGGTGCCATGAATGCACTTGTTCGAGTATCTGCAGTCCTTACTAATGGACCTTTCTTATTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCTTTGAGGGAAGCTATGTGCTTTATGATGGATCCCAACCTTGGTAAACATGTTTGCTATGTCCAGTTTCCACAGAGATTTGATGGTATCGATAGGAATGATCGATATGCCAATCGTAATACAGTTTTCTTCGATATAAACTTGAGAGGTTTGGATGGCATTCAAGGTCCTGTTTATGTGGGTACTGGATGTGTCTTCAATAGGACAGCTTTATATGGTTATGAACCTCCTCTTAAACCCAAGCATAAAAAGCCTGGGTTGTTATCATCACTCTGTGGTGGAAATCGCAAGAGTTCAAAATCTAGTAATAAAGGATCAGACAAGAAAAAATCTAGCAAGCCCGTTGACCCAACTGTGCCCATTTTCAGTCTAGAGGATATAGAAGAGGGAGTAGAAGGTACTGGATTTGATGATGAGAAATCACTACTTATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCTGTTTTTGTTGCCTCTACACTTATGGAGAATGGTGGTGTTCCTCAGTCTGCTACTCCAGAAACTCTTCTTAAGGAGGCAATTCATGTTATCAGCTGTGGTTATGAGGATAAAACAGAATGGGGAACTGAGATAGGATGGATTTATGGTTCTGTCACGGAAGATATTCTTACTGGATTTAAGATGCATGCCCGTGGTTGGCGGTCTATATACTGCATGCCTAAGCGCCCAGCATTTAAAGGTTCTGCTCCCATCAATCTTTCAGACCGTCTAAACCAAGTAGAAATTCTTTTTAGTCGACACTGTCCCATCTGGTATGGTTATGGTGGAAGGCTAAAGTGGCTTGAAAGATTTGCATATGTCAACACCACAATCTATCCGGTCACTGCCATTCCCCTTCTCATGTATTGTACCTTGCCTGCTGTCTGTCTGCTGACTAACAAGTTCATTATTCCACAGATCAGTAACTTTGCAAGCATATggtttatctctctcttcctttccaTATTTGCTACTGGAATCCTGGAGATGAGGTGGAGCGGTGTTGGAATCGACGAGTGGTGGAGGAATGAACAGTTTTGGGTTATTGGTGGTGTCTCAGCACATCTCTTTGCTGTGTTCCAAGGCCTGCTTAAAGTGCTTGCTGGAATTGACACCAACTTCACCGTTACCTCCAAGGCCTCAGATGAAGATGGAGACTTTGCAGAACTCTACATGTTCAAATGGACCACCCTTCTCATCCCCCCCACAACCCTTCTCATAATAAACTTAGTGGGGGTTGTTGCTGGCATCTCCTATGCCATCAACAGTGGCTACCAATCATGGGGTCCCCTCTTTGGTAAGCTTTTCTTTGCATTTTGGGTCATCATCCATCTATACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACAGGACACCAACCATTGTGGTGGTGTGGTCCATTCTGCTTGCATCCATTTTCTCTCTGTTGTGGGTTAGGATTGATCCATTCACCACAAGGGTCACTGGTCCTGATGTTGAAGTGTGTGGAATTAACTGCTAG 3057 0.4413 MESEGEAGAKPVTALGAQVCQICGESVGKSVDGEPFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTQYKRHKGSPAILGDREEDDAAADGAIDFNYDSENQNQKQKIAERMLSWQLTYARGEEVGAPNYDKEVSHNHIPLLTSGQEVSGELSAASPERLSMASPAIGGGKRVHTYSSDVNQSPNIRVGDPGLGNVAWKERVDGWKMKQEKNVVPMSTGQAASERGAGDIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIMLRLAILCIFLHYRITNPVANAYALWLVSVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFSKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLLSSLCGGNRKSSKSSNKGSDKKKSSKPVDPTVPIFSLEDIEEGVEGTGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKTEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPVTAIPLLMYCTLPAVCLLTNKFIIPQISNFASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEVCGINC 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0053 1018 CDD mRING-HC-C4C4_CesA_plant 18 67 - -
Ssu2g0053 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 93 IPR013083 -
Ssu2g0053 1018 SUPERFAMILY Nucleotide-diphospho-sugar transferases 359 836 IPR029044 -
Ssu2g0053 1018 PANTHER CELLULOSE SYNTHASE 5 447 - -
Ssu2g0053 1018 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 5 447 - -
Ssu2g0053 1018 Pfam Cellulose synthase 446 1012 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu2g0053 1018 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 447 1018 - -
Ssu2g0053 1018 PANTHER CELLULOSE SYNTHASE 447 1018 - -
Ssu2g0053 1018 MobiDBLite consensus disorder prediction 597 633 - -
Ssu2g0053 1018 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
Ssu2g0053 1018 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 420 590 IPR029044 -
Ssu2g0053 1018 SUPERFAMILY RING/U-box 5 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0053 Ssu-Chr2 5150190 5156963 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0053 2 5150190 5156963 Ssu8g1639 8 37323348 37330467 PCT